Skip to main content

Table 3 Protein-coding gene statistics of selected Viridiplantae

From: Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

  

C. reinhardtii

P. patens

P. patens

S. moellendorffii

O. sativa

A. thaliana

  

(V4.1)

(V1.2)

(V1.6)

(FM3)

(V6.1)

(TAIR10)

Genes

#

15,935

27,726

32,275

22,259

40,577

27,206

Transcripts

#

15,935

27,966

38,357

22,259

50,939

35,176

Gene length [bp]

x̄

5,363

2,499

2,369

1,699

2,816

2,190

 

x̃

4,273

1,878

1,809

1,368

2,148

1,896

Transcript length [bp]

x̄

2,898

1,269

1,389

1,194

1,540

1,540

 

x̃

2,284

987

1,248

987

1,395

1,388

CDS length [bp]

x̄

2,043

1,131

1,062

1,145

1,079

1,234

 

x̃

1,425

867

813

951

879

1,053

Exon length [bp]

x̄

322

234

275

213

313

261

 

x̃

155

145

155

128

158

147

Intron length [bp]

x̄

308

277

278

110

415

164

 

x̃

238

206

213

59

169

100

Exons per gene

x̄

9.0

5.4

5.0

5.6

4.9

5.9

 

x̃

7

4

3

4

3

4

Introns per gene

x̄

8.0

4.4

4.0

4.6

3.9

4.9

 

x̃

6

3

2

3

2

3

5'-UTR exon length [bp]

x̄

181

171

211

92

189

119

 

x̃

138

127

157

50

122

88

5'-UTR intron length [bp]

x̄

513

502

520

184

666

315

 

x̃

274

353

390

70

355

239

3'-UTR exon length [bp]

x̄

634

323

338

166

377

217

 

x̃

537

299

311

110

316

201

3'-UTR intron length [bp]

x̄

859

505

268

280

500

204

 

x̃

470.5

215

213

65

180

104

5'-UTR length [bp]

x̄

204

231

307

110

254

152

 

x̃

158

184

258

54

156

112

3'-UTR length [bp]

x̄

653

352

367

194

464

237

 

x̃

551

322

334

121

358

210

Multi exon transcript

#

15,322

23,758

29,378

18,789

40,859

29,050

 

%

96.1%

84.9%

76.6%

84.4%

80.2%

82.6%

Single exon transcript

#

613

4,208

8,979

3,470

10,080

6,126

 

%

3.9%

15.1%

23.4%

15.6%

19.8%

17.4%

Transcripts with both 5' and 3'-UTR

#

15,856

4,515

15,757

2,178

31,089

26,255

Transcripts with 5'-UTR

#

15,896

5,691

18,180

2,506

31,793

27,097

Transcripts with 3'-UTR

#

15,895

7,205

19,041

3,653

33,252

28,049

Transcripts without UTR

#

0

19,585

16,893

18,278

16,983

6,285

Multi exon 5'-UTR

#

1,743

1,556

7,120

399

7,940

6,486

 

%

11.0%

27.3%

39.2%

15.9%

25.0%

23.9%

Single exon 5'-UTR

#

14,153

4,135

11,060

2,107

23,853

20,611

 

%

89.0%

72.7%

60.8%

84.1%

75.0%

76.1%

Multi exon 3'-UTR

#

480

462

1,387

522

5,010

2,027

 

%

3.0%

6.4%

7.3%

14.3%

15.1%

33.1%

Single exon 3'-UTR

#

15,415

6,743

17,654

3,131

28,242

26,022

 

%

97.0%

93.6%

92.7%

85.7%

84.9%

92.8%

  1. Selected properties of structure and organization of protein-coding genes within Viridiplantae. A more detailed list can be found in Additional file 4: Table A3. x̄ - average x̃ - median # - amount.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us