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Table 3 Protein-coding gene statistics of selected Viridiplantae

From: Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

   C. reinhardtii P. patens P. patens S. moellendorffii O. sativa A. thaliana
   (V4.1) (V1.2) (V1.6) (FM3) (V6.1) (TAIR10)
Genes # 15,935 27,726 32,275 22,259 40,577 27,206
Transcripts # 15,935 27,966 38,357 22,259 50,939 35,176
Gene length [bp] 5,363 2,499 2,369 1,699 2,816 2,190
  4,273 1,878 1,809 1,368 2,148 1,896
Transcript length [bp] 2,898 1,269 1,389 1,194 1,540 1,540
  2,284 987 1,248 987 1,395 1,388
CDS length [bp] 2,043 1,131 1,062 1,145 1,079 1,234
  1,425 867 813 951 879 1,053
Exon length [bp] 322 234 275 213 313 261
  155 145 155 128 158 147
Intron length [bp] 308 277 278 110 415 164
  238 206 213 59 169 100
Exons per gene 9.0 5.4 5.0 5.6 4.9 5.9
  7 4 3 4 3 4
Introns per gene 8.0 4.4 4.0 4.6 3.9 4.9
  6 3 2 3 2 3
5'-UTR exon length [bp] 181 171 211 92 189 119
  138 127 157 50 122 88
5'-UTR intron length [bp] 513 502 520 184 666 315
  274 353 390 70 355 239
3'-UTR exon length [bp] 634 323 338 166 377 217
  537 299 311 110 316 201
3'-UTR intron length [bp] 859 505 268 280 500 204
  470.5 215 213 65 180 104
5'-UTR length [bp] 204 231 307 110 254 152
  158 184 258 54 156 112
3'-UTR length [bp] 653 352 367 194 464 237
  551 322 334 121 358 210
Multi exon transcript # 15,322 23,758 29,378 18,789 40,859 29,050
  % 96.1% 84.9% 76.6% 84.4% 80.2% 82.6%
Single exon transcript # 613 4,208 8,979 3,470 10,080 6,126
  % 3.9% 15.1% 23.4% 15.6% 19.8% 17.4%
Transcripts with both 5' and 3'-UTR # 15,856 4,515 15,757 2,178 31,089 26,255
Transcripts with 5'-UTR # 15,896 5,691 18,180 2,506 31,793 27,097
Transcripts with 3'-UTR # 15,895 7,205 19,041 3,653 33,252 28,049
Transcripts without UTR # 0 19,585 16,893 18,278 16,983 6,285
Multi exon 5'-UTR # 1,743 1,556 7,120 399 7,940 6,486
  % 11.0% 27.3% 39.2% 15.9% 25.0% 23.9%
Single exon 5'-UTR # 14,153 4,135 11,060 2,107 23,853 20,611
  % 89.0% 72.7% 60.8% 84.1% 75.0% 76.1%
Multi exon 3'-UTR # 480 462 1,387 522 5,010 2,027
  % 3.0% 6.4% 7.3% 14.3% 15.1% 33.1%
Single exon 3'-UTR # 15,415 6,743 17,654 3,131 28,242 26,022
  % 97.0% 93.6% 92.7% 85.7% 84.9% 92.8%
  1. Selected properties of structure and organization of protein-coding genes within Viridiplantae. A more detailed list can be found in Additional file 4: Table A3. x̄ - average x̃ - median # - amount.