Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

Table 4 Comparison of the Gene Ontology (GO) annotation of P. patens V1.2 and V1.6

	Total GO terms	BP terms	MF terms	CC terms	Genes with GO terms	Genes with BP	Genes with MF	Genes with CC	Protein-coding genes
V1.2	56,935	10,681	39,894	6,360	11,586	8,449	10,408	4,774	27,966
V1.2	56,935	10,681	39,894	6,360	(41%)	(30%)	(37%)	(17%)	27,966
V1.6	66,234	15,581	24,415	26,238	18,786	10,326	13,110	14,839	32,275
					(58%)	(32%)	(41%)	(46%)

A general increase of protein-coding genes with an assigned GO term could be achieved in V1.6. The number of GO terms “molecular function” has been manually corrected for V1.2 (see text in section). BP – “biological process”: MF – “molecular function”; CC –“cellular component”.