Skip to main content

Table 5 Selected GO categories: P. patens in comparison to A. thaliana

From: Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

Gene family

q-value

GO term id

GO term

P. patens

A. thaliana

Two component system – histidine kinases and response regulators

6.91E-26

GO:0000160

two-component signal transduction system (phosphorelay)

124

78

4.60E-24

GO:0018106

peptidyl-histidine phosphorylation

72

3

1.03E-28

GO:0000155

two-component sensor activity

95

3

1.34E-08

GO:0000156

two-component response regulator activity

86

35

LHCs

1.39E-09

GO:0009765

photosynthesis, light harvesting

45

21

flagellum

0.000155148

GO:0001539

ciliary or flagellar motility

10

-

3.11E-05

GO:0019861

flagellum

19

-

0.000496321

GO:0030286

dynein complex

12

-

PAL

0.000726755

GO:0006559

L-phenylalanine catabolic process

14

3

0.010050079

GO:0016841

ammonia-lyase activity

17

5

ALDH

0.000574734

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity

18

4

  1. The GO enrichment analysis was performed using topGO with a q-value cut-off <0.05. Depicted are only GO terms overrepresented in P. patens and associated with the gene families reported to be expanded in P. patens.