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Figure 6 | BMC Genomics

Figure 6

From: Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species

Figure 6

Nucleotide diversity of LTR/Copia and LTR/Gypsy elements in Theobroma cacao . (A) Schematic diagram of the structure of the two most common LTR retrotransposons super-families in the T. cacao genome. (B) Partitioning of nucleotide variation is shown as percentage values next to each of the retrotransposon components. The white arrows with black background represents the long terminal repeat (LTR), black line regions in between open reading frames (ORFs) and LTRs and grey boxes represent the following open reading frames: Reverse transcriptase (RT), integrase (IT), capsid protein (GAG), aspartic proteinase (AP) and Rnase H (RH).

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