|
Sequence
|
Accession no. (JGI/NCBI)
|
Length (aa)
|
% EST coverage (≥98% identity)
|
No. of EST sequences
|
EST coverage region (aa) (≥98% identity)
|
Culture treatment
|
Reference
|
|---|
|
P. multiseries
| | | | | | | |
|
GPCR1
|
240179
|
906
|
45
|
1
|
499-906
|
Phosphate starvation
|
1JGI
|
|
GPCR2
|
117604
|
1003
|
17
|
1
|
616-819
|
Domoic acid-producing conditions
|
2
|
|
GPCR3
|
179685
|
521
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
GPCR4
|
288475
|
461
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
GPCR5
|
293132
|
887
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
F. cylindrus
| | | | | | | |
|
GPCR1
|
242057
|
911
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
GPCR2
|
241103
|
1020
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
GPCR3
|
236496
|
1102
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
GPCR4
|
266398
|
899
|
30
|
2
|
32-305
|
Osmotic stress, pooled RNA (5 treatments)
|
3
|
|
GPCR5
|
253555
|
257
|
No hits
|
N/A
|
N/A
|
N/A
|
N/A
|
|
P. tricornutum
| | | | | | | |
|
GPCR1A
|
219114538
|
688
|
100
|
64
|
1-688
|
16 different treatments
|
[20]
|
|
GPCR1B
|
219117625
|
626
|
100
|
64
|
1-619
|
16 different treatments
|
[20]
|
|
GPCR2
|
219114407
|
799
|
69
|
8
|
1-552
|
16 different treatments
|
[20]
|
|
GPCR3
|
219113755
|
1111
|
86
|
22
|
1-228/378-1111
|
16 different treatments
|
[20]
|
|
GPCR4
|
219113191
|
1012
|
74
|
18
|
1-125/366-986
|
16 different treatments
|
[20]
|
|
T. pseudonana
| | | | | | |
[25]
|
|
GPCR1
|
224005915
|
627
|
No hits
|
N/A
|
N/A
|
5Upregulated during silaffin-like response
|
[25]
|
|
GPCR2
|
224006404
|
846
|
26
|
1
|
570-792
|
Iron-limited cells
|
4JGI
|
- N/A, not applicable.
- 1http://genome.jgi-psf.org/Psemu1/Psemu1.home.html.
- 2Boissonneault KR, Bates SS, Milton S, Pelletier J, Housman DE: Gene discovery and expression profiling in the toxin (domoic acid)-producing marine diatom Pseudo-nitzschia multiseries (Bacillariophyceae) using cDNA microarrays, unpublished.
- 3Krell A, Gloeckner G: Analysis of an osmotic stress induced cDNA library of the psychrophilic diatom Fragilariopsis cylindrus, unpublished.
- 4http://genome.jgi-psf.org/Thaps3/Thaps3.home.html.
- 5T. pseudonana GPCR1 had no corresponding EST data but the sequence was found to be upregulated during transcriptome profiling under silicon starvation conditions.
