Table 2 Error of the RAS value differences between both DNA pools
RAS (Birdseed2) | RAS (CEL) | RAS (k-corrected) | RAS (PPC-corrected) | |||||
|---|---|---|---|---|---|---|---|---|
SNP set | Q90 (Median) | Mean (SD) | Q90 (Median) | Mean (SD) | Q90 (Median) | Mean (SD) | Q90 (Median) | Mean (SD) |
all SNPs (N = 772729) | 0.0613 (0.0229) | 0.0287 (0.024) | 0.0635 (0.0243) | 0.03 (0.024) | 0.0617 (0.0231) | 0.0289 (0.024) | NA | NA |
10000 SNPs MAF >1% | 0.0562 (0.0218) | 0.0266 (0.022) | 0.0583 (0.0227) | 0.0277 (0.022) | 0.0556 (0.0213) | 0.0262 (0.021) | 0.0616 (0.0229) | 0.0288 (0.024) |
10000 SNPs MAF >5% | 0.0578 (0.0229) | 0.0275 (0.022) | 0.0601 (0.0236) | 0.0286 (0.022) | 0.0574 (0.0226) | 0.0272 (0.022) | NA | NA |
RAS (tan-corrected n = 0.5) | RAS (tan-corrected n = 1) | RAS (tan-corrected n = 2) | ||||||
SNP set | Q90 (Median) | Mean (SD) | Q90 (Median) | Mean (SD) | Q90 (Median) | Mean (SD) | ||
all SNPs (N = 772729) | 0.0976 (0.0346) | 0.0457 (0.11) | 0.102 (0.0358) | 0.0488 (0.19) | 0.123 (0.0390) | 0.106 (3.1) | ||
10000 SNPs MAF >1% | 0.0671 (0.0266) | 0.0322 (0.025) | 0.0675 (0.0271) | 0.0326 (0.026) | 0.0715 (0.0285) | 0.0345 (0.028) | ||
10000 SNPs MAF >5% | 0.067 (0.0269) | 0.0325 (0.025) | 0.0667 (0.0270) | 0.0325 (0.025) | 0.068 (0.0274) | 0.0331 (0.026) | ||