Table 9 DNA repair proteins in the predicted proteome of A. digitifera
Gene sequence | KEGG Orthology | Encoded protein description |
|---|---|---|
v1.02961; v1.13402 | K03575 | A/G-specific adenine glycosylase (MutY) |
v1.11766 | K03919 | Alkylated DNA repair protein |
v1.04821 | K10765 | Alkylated DNA repair protein alkB homologue 1 |
v1.02479 | K10766 | Alkylated DNA repair protein alkB homologue 4 |
v1.20302 | K10767 | Alkylated DNA repair protein alkB homologue 5 |
v1.24450 | K10768 | Alkylated DNA repair protein alkB homologue 6 |
v1.02766; v1.09413 | K10770 | Alkylated DNA repair protein alkB homologue 8 |
v1.01590 [+ 4 other sequence copies] | K10884 | ATP-dependent DNA helicase 2 subunit 1 |
v1.18810; v1.03166; v1.08449 | K10885 | ATP-dependent DNA helicase 2 subunit 2 |
v1.08013 | K03722 | ATP-dependent DNA helicase DinG |
v1.03542 | K14635 | ATP-dependent DNA helicase MPH1 |
v1.06737 [+ 5 other sequence copies] | K15255 | ATP-dependent DNA helicase PIF1 |
v1.17360; v1.21235 | K10899 | ATP-dependent DNA helicase Q1 |
v1.01081 [+ 8 other sequence copies] | K10730 | ATP-dependent DNA helicase Q4 |
v1.16859 | K10902 | ATP-dependent DNA helicase Q5 |
v1.11661 [+ 19 other sequence copies] | K03654 | ATP-dependent DNA helicase RecQ |
v1.20397 | K03656 | ATP-dependent DNA helicase Rep |
v1.18049; v1.07731; v1.05830 | K10905 | ATR interacting protein |
v1.01679 | K01669 | Deoxyribodipyrimidine photo-lyase |
v1.03410; v1.12968; v1.00865; v1.16876 | K10887 | DNA cross-link repair 1C protein |
v1.07474; v1.07473; v1.01809 | K10610 | DNA damage-binding protein 1 |
v1.13116; v1.03378; v1.16328 | K10140 | DNA damage-binding protein 2 |
v1.17099 [+ 5 other sequence copies] | K11885 | DNA damage-inducible protein 1 |
v1.05469 | K06663 | DNA damage checkpoint protein |
v1.02859; v1.14719; v1.21030; v1.10920 | K04452 | DNA damage-inducible transcript 3 |
v1.02191 | K10844 | DNA excision repair protein ERCC-2 |
v1.19108 [+ 5 other sequence copies] | K10843 | DNA excision repair protein ERCC-3 |
v1.22267 [+ 4 other sequence copies] | K10848 | DNA excision repair protein ERCC-4 |
v1.15137 [+ 5 other sequence copies] | K10846 | DNA excision repair protein ERCC-5 |
v1.18550; v1.02606; v1.14935; v1.08831 | K10841 | DNA excision repair protein ERCC-6 |
v1.20045; v1.01844; v1.11724; v1.03203 | K10570 | DNA excision repair protein ERCC-8 |
v1.15430; v1.03058 | K03658 | DNA helicase IV |
v1.00228 [+ 4 other sequence copies] | K11665 | DNA helicase INO80 |
v1.00136; v1.0678; v1.21529 | K10776 | DNA ligase 3 |
v1.23293; v1.19418; v1.23430; v1.15721 | K10777 | DNA ligase 4 |
v1.19248 | K07458 | DNA mismatch endonuclease, patch repair protein |
v1.19011 | K08739 | DNA mismatch repair protein MLH3 |
v1.11513; v1.11449 | K08735 | DNA mismatch repair protein MSH2 |
v1.14781 | K08736 | DNA mismatch repair protein MSH3 |
v1.05696; v1.22444; v1.19162 | K08740 | DNA mismatch repair protein MSH4 |
v1.04904 | K08741 | DNA mismatch repair protein MSH5 |
v1.15360; v1.19426; v1.08585 | K08737 | DNA mismatch repair protein MSH6 |
v1.02429 [+ 8 other sequence copies] | K03572 | DNA mismatch repair protein MutL |
v1.03990 | K03555 | DNA mismatch repair protein MutS |
v1.14015 | K07456 | DNA mismatch repair protein MutS2 |
v1.08443 | K10864 | DNA mismatch repair protein PMS1 |
v1.15229 | K10858 | DNA mismatch repair protein PMS2 |
v1.08658; v1.14152; v1.01681 | K15082 | DNA repair protein RAD7 |
v1.16407 [+ 27 other sequence copies] | K10866 | DNA repair protein RAD50 |
v1.22193 | K04482 | DNA repair protein RAD51 |
v1.02646; v1.22076 | K10958 | DNA repair protein RAD57 |
v1.15671 [+ 4 other sequence copies] | K04483 | DNA repair protein RadA |
v1.16193; v1.19033 | K04485 | DNA repair protein RadA/Sms |
v1.16079; v1.07685 | K04484 | DNA repair protein RadB |
v1.21363; v1.22360; v1.02900 | K03584 | DNA repair protein RecO (recombination protein O) |
v1.18390 | K03515 | DNA repair protein REV1 |
v1.04705 | K10991 | DNA repair protein Swi5/Sae3 |
v1.13920; v1.03800; v1.16133 | K10803 | DNA repair protein XRCC1 |
v1.15052 | K10879 | DNA repair protein XRCC2 |
v1.09315 [+ 4 other sequence copies] | K10886 | DNA repair protein XRCC4 |
v1.02733; v1.24592 | K10868 | DNA repair protein XRS2 |
v1.14551; v1.23176 | K10873 | DNA repair and recombination protein RAD52 |
v1.20503 [+ 4 other sequence copies] | K10875 | DNA repair and recombination protein RAD54 |
v1.23173; v1.16050 | K10877 | DNA repair and recombination protein RAD54B |
v1.07227; v1.08907; v1.09439; v1.02644 | K10847 | DNA repair protein complementing XP-A cells |
v1.11534 [+ 5 other sequence copies] | K10865 | Double-strand break repair protein MRE11 |
v1.07939 | K03660 | N-glycosylase/DNA lyase |
v1.16163 | K03652 | 3-Methyladenine DNA glycosylase |
v1.07231 | K10726 | Replicative DNA helicase Mcm |
v1.05482 | K04499 | RuvB-like protein 1 (pontin 52) |
v1.19813 | K11338 | RuvB-like protein 2 |
v1.06890 | K15080 | Single-strand annealing weakened protein 1 |
v1.17193; v1.14087 | K03111 | Single-strand DNA-binding protein |
v1.15575 | K10800 | Single-strand monofunctional uracil DNA glycosylase |
v1.07134 | K10992 | Swi5-dependent recombination DNA repair protein 1 |
v1.13860 | K03649 | TDG/mug DNA glycosylase family protein |
v1.14423; v1.14399; v1.05070 | K03648 | Uracil-DNA glycosylase |
v1.23838 | K10791 | Three prime repair exonuclease 2 |
v1.19522 | K10839 | UV excision repair protein RAD23 |