Table 1 Statistics on read coverage and the identified deletions
From: Identification of medium-sized genomic deletions with low coverage, mate-paired restricted tags
Library 1 (33x2) | Library 2 (48x2) | Combined library | |
|---|---|---|---|
Raw reads | 45.9 M1 / 1.51 Gb2 | 148 M / 7.11 Gb | 194 M / 8.63 Gb |
Mapped reads | 24.3 M / 0.80 Gb | 68.4 M / 3.28 Gb | 92.7 M / 4.08 Gb |
Read pairs | 9.41 M / 0.62 Gb | 24.7 M / 2.37 Gb | 34.1 M / 2.99 Gb |
Ditags | 7.66 M / 0.51 Gb | 21.3 M / 2.05 Gb | 29.0 M / 2.55 Gb |
Ditags mapped to Ref-Ditags | 6.73 M / 0.44 Gb | 11.4 M / 1.09 Gb | 18.1 M / 1.53 Gb |
Ref-Ditags identified (1,509,487 in all) | 794,515 (53%) | 981,480 (65%) | 1,024,072 (68%) |
Average ditag depth on each Ref-Ditag | 8.47 | 11.57 | 17.66 |
Genomic regions covered (Mb)3 | 834 (28%) | 1,274 (42%) | 1,336 (45%) |
Median fragment length (bp) | 880 | 1,056 | 1,056 |
Deletions identified | 51 (29%) | 150 (86%) | 175 |
Average ditag depth on each deletion | 5.37 | 4.53 | 5.70 |