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Table 1 List of 25 overrepresented motifs identified in this study

From: Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile

Motif family Motif number Consensus motif pattern Algorithms that identified the motifs No. of clusters whose upstream sequences showed significant overrepresentation
   5′ -> 3′ MEME AlignACE FIRE  
AP2_1-like Motif 1 BGCATGCAH + + + 33
  Motif 7 ACATGY - - + 6
  Motif 8 HTGCACH - - + 10
  Motif 11 MAMTGCA - - + 4
  Motif 23 DRMTTSCATB - - + 2
G-box-like Motif 2 DTGTGGGG + + + 38
  Motif 6 KKGRGGGGRR + + - 16
E2F-like Motif 3 DTTGSCGCCH + + + 114
  Motif 4 TTTGGCGGGAAV + + - 47
GAGA-like Motif 5 GDGRRRRARARRRARA + + - 12
  Motif 13 WATTGCA - - + 6
CAAT-box-like Motif 16 TTTTGCM - - + 7
  Motif 20 BTAKTGCD - - + 8
  Motif 10 RMGACG - - + 1
Unknown set 1 Motif 12 GAGWCA - - + 5
  Motif 15 GAYCTMD - - + 9
  Motif 17 VYGTCBC - - + 1
  Motif 18 WTAGACR - - + 1
  Motif 19 HTAGVTCW - - + 1
  Motif 9 YTTACAT - - + 12
Unknown set 2 Motif 24 KATYTRCAH - - + 3
Other unknown Motif 14 MAACTA - - + 122
  Motif 21 VRTRAGGAD - - + 3
  Motif 22 HTKWYGAC - - + 5
  Motif 25 WMTAANGA - - + 12
  1. IUPAC codes are used to represent each motif. The algorithm(s) that identified each motif are indicated, as well as the number of clusters containing the overrepresented upstream motif.