Skip to main content
Figure 13 | BMC Genomics

Figure 13

From: Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling

Figure 13

Structure of the HMM for assembling operons/transcripts using RNA-seq reads. E represents the expression state and N the non-expression state, Letters r 1 , r 2 ,…,r n  are the emission values of E, μ contig  is the mean length of sufficiently expressed contigs in the positive training set; and s 1 , s 2 ,…, s N  are the emission values of N, and μ zero  is the mean length of the non-expressed regions in the negative training set.

Back to article page