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Table 4 Simple sequence repeat (SSRs) for intra-species discrimination

From: Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae

Repeat

Length

Region

Locus

Organelle

Strain

A

10

Intergenic

psbB-petF

pt

IMET1, 531

T

10

Genic

rps12

pt

IMET1, 531

T

10

Intergenic

rpl16-rps3

pt

IMET1, 531

A

10

Intergenic

secA-rpl34

pt

IMET1, 531

G *

14

Intergenic

psbV-clpC

pt

IMET1

TA *

14

Intergenic

trnK(uuu)-trnG(gcc)

pt

IMET1

T *

10

Intergenic

tufA-rps7

pt

531

T

11

Genic

coxI

mt

IMET1, 531

A

11

Genic

atp1

mt

IMET1, 531

A

10

Intergenic

orf321

mt

IMET1, 531

A

10

Genic

rpl14

mt

IMET1, 531

T

10

Intergenic

trnD(gtc)-trnG(tcc)

mt

IMET1, 531

A

10

Genic

rps13

mt

IMET1, 531

T

10

Intergenic

trnK(ttt)-nad4L

mt

IMET1, 531

A *

12

Genic

rps3

mt

531

  1. * SSRs that are specifically present in IMET1 or CCMP531.