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Table 4 Simple sequence repeat (SSRs) for intra-species discrimination

From: Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae

Repeat Length Region Locus Organelle Strain
A 10 Intergenic psbB-petF pt IMET1, 531
T 10 Genic rps12 pt IMET1, 531
T 10 Intergenic rpl16-rps3 pt IMET1, 531
A 10 Intergenic secA-rpl34 pt IMET1, 531
G * 14 Intergenic psbV-clpC pt IMET1
TA * 14 Intergenic trnK(uuu)-trnG(gcc) pt IMET1
T * 10 Intergenic tufA-rps7 pt 531
T 11 Genic coxI mt IMET1, 531
A 11 Genic atp1 mt IMET1, 531
A 10 Intergenic orf321 mt IMET1, 531
A 10 Genic rpl14 mt IMET1, 531
T 10 Intergenic trnD(gtc)-trnG(tcc) mt IMET1, 531
A 10 Genic rps13 mt IMET1, 531
T 10 Intergenic trnK(ttt)-nad4L mt IMET1, 531
A * 12 Genic rps3 mt 531
  1. * SSRs that are specifically present in IMET1 or CCMP531.
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BMC Genomics

ISSN: 1471-2164

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