Table 3 The 25 most abundant InterPro domains revealed by the InterProScan annotation of the high quality coelacanth transcript set
From: Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis
InterPro domain | Description | Number of detected contigs |
|---|---|---|
IPR000719 | Protein kinase, catalytic domain | 2,041 |
IPR007087 | Zinc finger, C2H2 | 1,778 |
IPR002290 | Serine/threonine-/dual-specificity protein kinase, catalytic domain | 1,472 |
IPR013783 | Immunoglobulin-like fold | 1,130 |
IPR015880 | Zinc finger, C2H2-like | 1,056 |
IPR020635 | Tyrosine-protein kinase, catalytic domain | 981 |
IPR011009 | Protein kinase-like domain | 946 |
IPR020683 | Ankyrin repeat-containing domain | 927 |
IPR001680 | WD40 repeat | 845 |
IPR001849 | Pleckstrin homology domain | 834 |
IPR003961 | Fibronectin, type III | 822 |
IPR001452 | Src homology-3 domain | 792 |
IPR008271 | Serine/threonine-protein kinase, active site | 696 |
IPR001841 | Zinc finger, RING-type | 687 |
IPR007110 | Immunoglobulin-like | 684 |
IPR017986 | WD40-repeat-containing domain | 675 |
IPR020849 | Small GTPase superfamily, Ras type | 674 |
IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain | 662 |
IPR000504 | RNA recognition motif domain | 661 |
IPR002110 | Ankyrin repeat | 659 |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | 614 |
IPR001478 | PDZ domain | 600 |
IPR015943 | WD40/YVTN repeat-like-containing domain | 600 |
IPR001650 | Helicase, C-terminal | 575 |
IPR016024 | Armadillo-type fold | 564 |