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Table 3 Real-time quantitative PCR validation of MACS-identified genes differentially acetylated for H4K5 in FC over control in the hippocampus [HIP] and cerebellum [CER]

From: Genome-wide analysis of H4K5 acetylation associated with fear memory in mice

Gene ID

Gene name

Fold-change [HIP]*

Significance [HIP]

Fold-change [CER]

Significance [CER]

Fbxl11

F-box and leucine-rich repeat protein 11 [Lysine (K)-specific demethylase 2A (Kdm2a)]

4.31±1.40

0.05

1.04±0.05

NS

Ryr3

Ryanodine receptor 3

3.92±1.70

0.1

1.10±0.51

NS

Akap6

A kinase (PRKA) anchor protein 6

3.77±0.71

0.01

3.94±1.37

0.05

Atp8a1

ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1

3.35±0.46

0.01

0.96±0.23

NS

Nrxn1

Neurexin I

2.99±0.29

0.001

1.21±0.58

NS

Rnf220

Ring finger protein 220

2.98±1.84

NS

1.30±0.53

NS

Kcnd2

Potassium voltage-gated channel, Shal-related family, member 2

2.94±0.36

0.001

0.46±0.11

NS

Grid1

Glutamate receptor, ionotropic, delta 1

2.92±0.60

0.05

1.15±0.33

NS

Col2a1

Collagen, type II, alpha 1

2.35±0.42

0.01

1.01±0.21

NS

Serpina9

serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9

1.90±0.90

NS

0.82±0.40

NS

Megf11

Multiple EGF-like-domains 11

1.71±0.67

NS

1.01±0.33

NS

Ntrk2

Neurotrophic tyrosine kinase, receptor, type 2

1.09±0.15

NS

1.32±0.20

NS

  1. * Ranked according to fold-change in HIP.
  2. Shown as fold-change over control ± SEM.
  3. NS not significant.