Table 5 Selected Torvum transcripts annotated as R genes with an expression ratio in Torvum of at least 1.3 (infected vs control)
From: Solanum torvum responses to the root-knot nematode Meloidogyne incognita
ID | B2GO sequence description | Length | Best hit description | Eggplant mean expr control | Eggplant mean expr infected | Torvum mean expr control | Torvum mean expr infected | Eggplant expr ratio | Torvum expr ratio |
|---|---|---|---|---|---|---|---|---|---|
Tor5_c12566 | Disease resistance identical | 710 | Gi|54261825|gb|AAV31175.1|Putative disease resistance protein identical [Solanum tuberosum] | 168.426 | 396.871 | 485.109 | 654.998 | 2.356 | 1.350 |
Tor5_c14147 | Leucine-rich repeat containing | 493 | Gi|212717155|gb|ACJ37419.1|NBS-LRR disease resistance protein [Glycine max] | 1030.461 | 801.279 | 370.852 | 511.059 | 0.778 | 1.378 |
Tor5_c15732 | Nbs-lrr resistance protein | 498 | Gi|224117364|ref|XP_002317554.1|nbs-lrr resistance protein [Populus trichocarpa] >gi|222860619|gb|EEE98166.1| nbs-lrr resistance protein [Populus trichocarpa] | 689.272 | 692.443 | 258.673 | 398.725 | 1.005 | 1.541 |
Tor5_c2525 | Af202179_1disease resistance protein bs2 | 664 | Gi|6456755|gb|AAF09256.1|AF202179_1disease resistance protein BS2 [Capsicum chacoense] | 171.605 | 69.228 | 1736.174 | 2279.920 | 0.403 | 1.313 |
Tor5_c4459 | Nbs-lrr type resistance protein | 510 | Gi|83630761|gb|ABC26878.1|NRC1 [Solanum lycopersicum] | 1792.413 | 1541.649 | 760.225 | 1283.284 | 0.860 | 1.688 |
Tor5_c4728 | Disease resistance identical disease resistance protein | 625 | Gi|83630761|gb|ABC26878.1|NRC1 [Solanum lycopersicum] | 196.591 | 152.134 | 449.926 | 664.659 | 0.774 | 1.477 |
Tor5_c6199 | 715 | gi|255561552|ref|XP_002521786.1|Disease resistance | 233.431 | 212.023 | 197.292 | 304.554 | 0.908 | 1.544 | |
Protein RPP13 putative [Ricinus communis] >gi|223538999|gb|EEF40596.1| Disease resistance protein RPP13. putative [Ricinus communis] | |||||||||
Tor5_c7069 | Nbs-lrr resistance protein | 685 | Gi|15418712|gb|AAG31015.1|tospovirus resistance protein C [Solanum lycopersicum] | 294.835 | 199.927 | 811.956 | 1100.840 | 0.678 | 1.356 |
Tor5_c7274 | Disease resistance protein | 608 | Gi|323370547|gb|ADX43928.1|ADR1 [Solanum tuberosum] | 11454.467 | 12324.265 | 1568.053 | 2488.333 | 1.076 | 1.587 |
Tor5_c8985 | Disease resistance- dirigent domain-containing protein | 490 | Gi|224112881|ref|XP_002316318.1|predicted protein [Populus trichocarpa] >gi|222865358|gb|EEF02489.1| predicted protein [Populus trichocarpa] | 1862.947 | 777.762 | 678.101 | 992.523 | 0.417 | 1.464 |
Tor5_c9198 | Nbs-lrr resistance protein | 672 | Gi|3426261|gb|AAC32253.1|disease resistance gene homolog Mi-copy1 [Solanum lycopersicum] | 360.807 | 155.364 | 188.721 | 282.809 | 0.431 | 1.499 |
Tor5_rep_c1655 | Disease resistance response protein | 803 | Gi|224105209|ref|XP_002313728.1|predicted protein [Populus trichocarpa] >gi|222850136|gb|EEE87683.1| predicted protein [Populus trichocarpa] | 77.749 | 138.308 | 345.620 | 512.257 | 1.779 | 1.482 |
Tor5_rep_c4425 | Nbs-lrr resistance protein | 574 | Gi|15418710|gb|AAG31014.1|tospovirus resistance protein B [Solanum lycopersicum] | 224.075 | 149.135 | 339.977 | 456.547 | 0.666 | 1.343 |
Tor5_rep_c7021 | Disease resistance protein | 519 | Gi|53749455|gb|AAU90310.1|hypothetical protein STB1_54t00008 [Solanum tuberosum] | 252.559 | 282.853 | 229.561 | 303.609 | 1.120 | 1.323 |
Tor5_rep_c9578 | Disease resistance protein | 472 | Gi|53749455|gb|AAU90310.1|hypothetical protein STB1_54t00008 [Solanum tuberosum] | 470.054 | 344.881 | 274.840 | 413.509 | 0.734 | 1.505 |
Tor5_s25440 | Disease resistance protein | 473 | Gi|224117364|ref|XP_002317554.1|nbs-lrr resistance protein [Populus trichocarpa] >gi|222860619|gb|EEE98166.1| nbs-lrr resistance protein [Populus trichocarpa] | 10260.362 | 8458.349 | 1366.653 | 3326.171 | 0.824 | 2.434 |