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Table 5 Selected Torvum transcripts annotated as R genes with an expression ratio in Torvum of at least 1.3 (infected vs control)

From: Solanum torvum responses to the root-knot nematode Meloidogyne incognita

ID B2GO sequence description Length Best hit description Eggplant mean expr control Eggplant mean expr infected Torvum mean expr control Torvum mean expr infected Eggplant expr ratio Torvum expr ratio
Tor5_c12566 Disease resistance identical 710 Gi|54261825|gb|AAV31175.1|Putative disease resistance protein identical [Solanum tuberosum] 168.426 396.871 485.109 654.998 2.356 1.350
Tor5_c14147 Leucine-rich repeat containing 493 Gi|212717155|gb|ACJ37419.1|NBS-LRR disease resistance protein [Glycine max] 1030.461 801.279 370.852 511.059 0.778 1.378
Tor5_c15732 Nbs-lrr resistance protein 498 Gi|224117364|ref|XP_002317554.1|nbs-lrr resistance protein [Populus trichocarpa] >gi|222860619|gb|EEE98166.1| nbs-lrr resistance protein [Populus trichocarpa] 689.272 692.443 258.673 398.725 1.005 1.541
Tor5_c2525 Af202179_1disease resistance protein bs2 664 Gi|6456755|gb|AAF09256.1|AF202179_1disease resistance protein BS2 [Capsicum chacoense] 171.605 69.228 1736.174 2279.920 0.403 1.313
Tor5_c4459 Nbs-lrr type resistance protein 510 Gi|83630761|gb|ABC26878.1|NRC1 [Solanum lycopersicum] 1792.413 1541.649 760.225 1283.284 0.860 1.688
Tor5_c4728 Disease resistance identical disease resistance protein 625 Gi|83630761|gb|ABC26878.1|NRC1 [Solanum lycopersicum] 196.591 152.134 449.926 664.659 0.774 1.477
Tor5_c6199 715 gi|255561552|ref|XP_002521786.1|Disease resistance 233.431 212.023 197.292 304.554 0.908 1.544
Protein RPP13 putative [Ricinus communis] >gi|223538999|gb|EEF40596.1| Disease resistance protein RPP13. putative [Ricinus communis]
Tor5_c7069 Nbs-lrr resistance protein 685 Gi|15418712|gb|AAG31015.1|tospovirus resistance protein C [Solanum lycopersicum] 294.835 199.927 811.956 1100.840 0.678 1.356
Tor5_c7274 Disease resistance protein 608 Gi|323370547|gb|ADX43928.1|ADR1 [Solanum tuberosum] 11454.467 12324.265 1568.053 2488.333 1.076 1.587
Tor5_c8985 Disease resistance- dirigent domain-containing protein 490 Gi|224112881|ref|XP_002316318.1|predicted protein [Populus trichocarpa] >gi|222865358|gb|EEF02489.1| predicted protein [Populus trichocarpa] 1862.947 777.762 678.101 992.523 0.417 1.464
Tor5_c9198 Nbs-lrr resistance protein 672 Gi|3426261|gb|AAC32253.1|disease resistance gene homolog Mi-copy1 [Solanum lycopersicum] 360.807 155.364 188.721 282.809 0.431 1.499
Tor5_rep_c1655 Disease resistance response protein 803 Gi|224105209|ref|XP_002313728.1|predicted protein [Populus trichocarpa] >gi|222850136|gb|EEE87683.1| predicted protein [Populus trichocarpa] 77.749 138.308 345.620 512.257 1.779 1.482
Tor5_rep_c4425 Nbs-lrr resistance protein 574 Gi|15418710|gb|AAG31014.1|tospovirus resistance protein B [Solanum lycopersicum] 224.075 149.135 339.977 456.547 0.666 1.343
Tor5_rep_c7021 Disease resistance protein 519 Gi|53749455|gb|AAU90310.1|hypothetical protein STB1_54t00008 [Solanum tuberosum] 252.559 282.853 229.561 303.609 1.120 1.323
Tor5_rep_c9578 Disease resistance protein 472 Gi|53749455|gb|AAU90310.1|hypothetical protein STB1_54t00008 [Solanum tuberosum] 470.054 344.881 274.840 413.509 0.734 1.505
Tor5_s25440 Disease resistance protein 473 Gi|224117364|ref|XP_002317554.1|nbs-lrr resistance protein [Populus trichocarpa] >gi|222860619|gb|EEE98166.1| nbs-lrr resistance protein [Populus trichocarpa] 10260.362 8458.349 1366.653 3326.171 0.824 2.434