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Table 1 Straw-induced CAZy genes

From: Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Transcript ID

Annotation [18]

CAZy Family

48 h Glucose RPKM

24 h Straw RPKM

5 h Glucose RPKM

123818

Endo-β-1,4-xylanase, xyn2

GH11

3.26

3776.93

3.72

123989

Cellobiohydrolase, cbh1

GH7

1.57

2345.54

2.38

111849

Endo-β-1,4-xylanase, xyn4

GH30

1.18

1219.13

0.99

121127

Beta-xylosidase, bxl1

GH3

0.85

1182.53

2.15

72526

Alpha-glucuronidase glr1

GH67

0.86

1024.64

0.71

72567

Cellobiohydrolase, cbh2

GH6

0.58

861.40

0.92

73632

Acetyl xylan esterase, axe1

CE5

0.77

676.15

0.56

73643

Copper-dependent monooxygenase, cel61a

AA9

0.72

668.44

1.03

123992

Swollenin, contains CBM1, swo1

Not determined

3.94

592.13

2.08

74223

Endo-β-1,4-xylanase, xyn1

GH11

0.32

500.83

0.05

120749

Beta-glucosidase, bgl2

GH1

1.53

476.91

9.38

120961

Copper-dependent monooxygenase, cel61b

AA9

0.47

476.22

0.40

120312

Endo-β-1,4-glucanase, egl2

GH5

0.36

471.52

0.22

121418

Acetyl Esterase, aes1

CE16

0.27

342.73

0.32

69944

Candidate α-xylosidase/α-glucosidase

GH31

0.26

327.82

0.20

73638

Candidate cellulose binding protein, CBM1, cip1

Not determined

0.25

323.47

0.41

103049

Candidate endo-polygalacturonase

GH28

0.33

227.26

0.27

76210

Alpha-L-arabinofuranosidase, abf2

GH62

0.36

224.30

0.04

54219

Acetyl xylan esterase

CE5

0.04

216.93

0.16

49081

Xyloglucanase, cel74a

GH74

1.22

213.92

0.60

122780

Candidate exo-rhamnogalacturonase, rgx1

GH28

0.84

130.03

2.04

56996

Beta-mannanase, man1

GH5

0.09

108.27

0.15

76672

Beta-glucosidase, bgl1

GH3

0.04

105.71

0.22

62166

Beta-mannosidase

GH2

1.88

98.68

4.04

22197

Beta-glucosidase, cel1b

GH1

1.11

94.50

1.42

123283

A;lpha-L-arabinofuranosidase I, abf1

GH54

0.49

91.97

0.39

122081

Endo-β-1,4-glucanase, egl1

GH7

0.03

91.03

0.14

123940

Glucuronoyl esterase, cip2

CE15

0.05

87.99

0.13

80240

Beta-galactosidase, bga1

GH35

0.61

87.67

0.18

124016

Alpha-galactosidase, agl2

GH36

0.76

82.70

0.59

74198

Candidate α-1,2-mannosidase

GH92

0.12

72.91

0.03

112392

Candidate endo-β-1,4-xylanase, xyn5

GH11

0.04

64.84

0.10

110894

Candidate endo-β-1,6-galactanase

GH30

0.58

57.01

0.20

  1. Highly expressed CAZy-encoding genes with an RPKM value greater than 50 at 24 h straw and an over 20-fold expression between 48 h glucose and 24 h straw.
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BMC Genomics

ISSN: 1471-2164

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