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Table 1 Straw-induced CAZy genes

From: Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger

Transcript ID Annotation [18] CAZy Family 48 h Glucose RPKM 24 h Straw RPKM 5 h Glucose RPKM
123818 Endo-β-1,4-xylanase, xyn2 GH11 3.26 3776.93 3.72
123989 Cellobiohydrolase, cbh1 GH7 1.57 2345.54 2.38
111849 Endo-β-1,4-xylanase, xyn4 GH30 1.18 1219.13 0.99
121127 Beta-xylosidase, bxl1 GH3 0.85 1182.53 2.15
72526 Alpha-glucuronidase glr1 GH67 0.86 1024.64 0.71
72567 Cellobiohydrolase, cbh2 GH6 0.58 861.40 0.92
73632 Acetyl xylan esterase, axe1 CE5 0.77 676.15 0.56
73643 Copper-dependent monooxygenase, cel61a AA9 0.72 668.44 1.03
123992 Swollenin, contains CBM1, swo1 Not determined 3.94 592.13 2.08
74223 Endo-β-1,4-xylanase, xyn1 GH11 0.32 500.83 0.05
120749 Beta-glucosidase, bgl2 GH1 1.53 476.91 9.38
120961 Copper-dependent monooxygenase, cel61b AA9 0.47 476.22 0.40
120312 Endo-β-1,4-glucanase, egl2 GH5 0.36 471.52 0.22
121418 Acetyl Esterase, aes1 CE16 0.27 342.73 0.32
69944 Candidate α-xylosidase/α-glucosidase GH31 0.26 327.82 0.20
73638 Candidate cellulose binding protein, CBM1, cip1 Not determined 0.25 323.47 0.41
103049 Candidate endo-polygalacturonase GH28 0.33 227.26 0.27
76210 Alpha-L-arabinofuranosidase, abf2 GH62 0.36 224.30 0.04
54219 Acetyl xylan esterase CE5 0.04 216.93 0.16
49081 Xyloglucanase, cel74a GH74 1.22 213.92 0.60
122780 Candidate exo-rhamnogalacturonase, rgx1 GH28 0.84 130.03 2.04
56996 Beta-mannanase, man1 GH5 0.09 108.27 0.15
76672 Beta-glucosidase, bgl1 GH3 0.04 105.71 0.22
62166 Beta-mannosidase GH2 1.88 98.68 4.04
22197 Beta-glucosidase, cel1b GH1 1.11 94.50 1.42
123283 A;lpha-L-arabinofuranosidase I, abf1 GH54 0.49 91.97 0.39
122081 Endo-β-1,4-glucanase, egl1 GH7 0.03 91.03 0.14
123940 Glucuronoyl esterase, cip2 CE15 0.05 87.99 0.13
80240 Beta-galactosidase, bga1 GH35 0.61 87.67 0.18
124016 Alpha-galactosidase, agl2 GH36 0.76 82.70 0.59
74198 Candidate α-1,2-mannosidase GH92 0.12 72.91 0.03
112392 Candidate endo-β-1,4-xylanase, xyn5 GH11 0.04 64.84 0.10
110894 Candidate endo-β-1,6-galactanase GH30 0.58 57.01 0.20
  1. Highly expressed CAZy-encoding genes with an RPKM value greater than 50 at 24 h straw and an over 20-fold expression between 48 h glucose and 24 h straw.
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BMC Genomics

ISSN: 1471-2164

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