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Figure 2 | BMC Genomics

Figure 2

From: Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA

Figure 2

Structure models for several known EBV ncRNAs. Nucleotide positions for the EBV-2 RefSeq genome sequence are annotated on the structure. Below are the predicted Gibbs folding free energies (in kcal/mol) and z-scores. (A) EBER1 modeled structure. Base pairs that differ from the Rfam model (Rfam ID# RF01789) are covered by red Xs, while the mis-predicted Rfam base pair is indicated with a green line. (B) Modeled structures in RNAz-predicted structured region, locus 209, which contains the BART3, BART4, and BART1 miRNAs (indicated in orange boxes). Sequences are from the EBV-2 RefSeq (NC_009334.1) genome. (C) Modeled structure for the viral snoRNA (v-snoRNA) previously reported [52].

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BMC Genomics

ISSN: 1471-2164

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