Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA

Table 2 EBV short intron predicted free energies and z-scores

5′ nt	3′ nt	Length	APSI^a(%)	ΔG (kcal/mol)	Z-score	RNAz
273	359	87	99.4	−11.9	0.77
459	539	81	96.9	−15.1	0.56
789	870	82	100.0	−12.7	0.25
952	1025	74	100.0	−3.0	1.12
1197	1279	83	100.0	−10.9	0.24
1496	1573	78	99.4	−20.7	−0.54	Locus 2
11466	11610	145	99.2	−41.3	−3.20	Locus 17
14939	14541	149	98.2	−30.7	1.45
14603^b	14683^b	81	100.0	−12.9	0.78
35474	35557	84	97.0	−4.8	0.8
71968	72073	106	100.0	−42.6	−0.41
80362	80446	85	94.3	−23.1	−1.12	Locus 113
83431	83508	78	97.0	−9.3	1.13
87014	87087	74	99.3	−25.6	−1.88	Locus 126
90856	90940	85	95.9	−14.5	−0.02
91046	91196	151	82.9	−47.3	1.06
105929	106056	128	96.2	−59.6	−3.52	Locus 152
169949	170024	76	95.0	−3.3	0.64
170112	170189	78	98.3	−0.4	0.22

ISSN: 1471-2164