Table 3 Major transcription factor families identified by conserved domain annotation
From: Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals
Transcription factors identified by KOG/InterPro/GO annotation in Fav1 | |
|---|---|
Sequence description | Sequences(n) |
CBF | 1 |
Transcriptional Coactivator P50 | 1 |
Transcriptional Coactivator P100 | 6 |
Transcriptional Coactivator CAPER | 2 |
Homeobox domain | 7 |
HSF-type DNA-binding | 1 |
P53 DNA-binding domain | 2 |
NF-X1-type zinc finger protein | 3 |
Dimerization partner (TDP) | 2 |
Fork head | 15 |
Basic region leucine zipper & bZIP | 6 |
Helix-loop-helix DNA binding domain | 12 |
Myb-like DNA-binding domain | 3 |
Zinc finger C2H2 type | 3 |
Zinc finger MIZ type | 1 |
HMG box | 12 |
TBOX | 5 |
ETS domain | 12 |
MADS domain | 4 |