TY - JOUR AU - Polezhaeva, M. A. AU - Lascoux, M. AU - Semerikov, V. L. PY - 2010 DA - 2010// TI - Cytoplasmic DNA variation and biogeography of Larix Mill. in Northeast Asia JO - Mol Ecol VL - 19 UR - https://doi.org/10.1111/j.1365-294X.2010.04552.x DO - 10.1111/j.1365-294X.2010.04552.x ID - Polezhaeva2010 ER - TY - JOUR AU - Schlosser, W. E. AU - Bassman, J. H. AU - Wandschneider, P. R. AU - Everett, R. L. PY - 2003 DA - 2003// TI - A carbon balance assessment for containerized Larix gmelinii seedlings in the Russian Far East JO - Forest ecol manage VL - 173 UR - https://doi.org/10.1016/S0378-1127(02)00014-2 DO - 10.1016/S0378-1127(02)00014-2 ID - Schlosser2003 ER - TY - BOOK AU - Yang, C. PY - 2009 DA - 2009// TI - Study on Seed Provenances of Larix gmelinii (Rupr.) Rupr PB - Science Press CY - Beijing ID - Yang2009 ER - TY - JOUR AU - Ossowski, S. AU - Schneeberger, K. AU - Clark, R. M. AU - Lanz, C. AU - Warthmann, N. AU - Weigel, D. PY - 2008 DA - 2008// TI - Sequencing of natural strains of Arabidopsis thaliana with short reads JO - Genome research VL - 18 UR - https://doi.org/10.1101/gr.080200.108 DO - 10.1101/gr.080200.108 ID - Ossowski2008 ER - TY - JOUR AU - Hillier, L. W. AU - Reinke, V. AU - Green, P. AU - Hirst, M. AU - Marra, M. A. AU - Waterston, R. H. PY - 2009 DA - 2009// TI - Massively parallel sequencing of the polyadenylated transcriptome of C. elegans JO - Genome research VL - 19 UR - https://doi.org/10.1101/gr.088112.108 DO - 10.1101/gr.088112.108 ID - Hillier2009 ER - TY - JOUR AU - Daines, B. AU - Wang, H. AU - Li, Y. AU - Han, Y. AU - Gibbs, R. AU - Chen, R. PY - 2009 DA - 2009// TI - High-throughput multiplex sequencing to discover copy number variants in Drosophila JO - Genetics VL - 182 UR - https://doi.org/10.1534/genetics.109.103218 DO - 10.1534/genetics.109.103218 ID - Daines2009 ER - TY - JOUR AU - Smith, D. R. AU - Quinlan, A. R. AU - Peckham, H. E. AU - Makowsky, K. AU - Tao, W. AU - Woolf, B. AU - Shen, L. AU - Donahue, W. F. AU - Tusneem, N. AU - Stromberg, M. P. PY - 2008 DA - 2008// TI - Rapid whole-genome mutational profiling using next-generation sequencing technologies JO - Genome research VL - 18 UR - https://doi.org/10.1101/gr.077776.108 DO - 10.1101/gr.077776.108 ID - Smith2008 ER - TY - JOUR AU - Bentley, D. R. AU - Balasubramanian, S. AU - Swerdlow, H. P. AU - Smith, G. P. AU - Milton, J. AU - Brown, C. G. AU - Hall, K. P. AU - Evers, D. J. AU - Barnes, C. L. AU - Bignell, H. R. PY - 2008 DA - 2008// TI - Accurate whole human genome sequencing using reversible terminator chemistry JO - Nature VL - 456 UR - https://doi.org/10.1038/nature07517 DO - 10.1038/nature07517 ID - Bentley2008 ER - TY - JOUR AU - Li, R. AU - Zhu, H. AU - Ruan, J. AU - Qian, W. AU - Fang, X. AU - Shi, Z. AU - Li, Y. AU - Li, S. AU - Shan, G. AU - Kristiansen, K. PY - 2010 DA - 2010// TI - De novo assembly of human genomes with massively parallel short read sequencing JO - Genome research VL - 20 UR - https://doi.org/10.1101/gr.097261.109 DO - 10.1101/gr.097261.109 ID - Li2010 ER - TY - JOUR AU - Mortazavi, A. AU - Williams, B. A. AU - McCue, K. AU - Schaeffer, L. AU - Wold, B. PY - 2008 DA - 2008// TI - Mapping and quantifying mammalian transcriptomes by RNA-Seq JO - Nat Meth VL - 5 UR - https://doi.org/10.1038/nmeth.1226 DO - 10.1038/nmeth.1226 ID - Mortazavi2008 ER - TY - JOUR AU - Sultan, M. AU - Schulz, M. H. AU - Richard, H. AU - Magen, A. AU - Klingenhoff, A. AU - Scherf, M. AU - Seifert, M. AU - Borodina, T. AU - Soldatov, A. AU - Parkhomchuk, D. PY - 2008 DA - 2008// TI - A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome JO - Science VL - 321 UR - https://doi.org/10.1126/science.1160342 DO - 10.1126/science.1160342 ID - Sultan2008 ER - TY - JOUR AU - Wang, J. AU - Wang, W. AU - Li, R. AU - Li, Y. AU - Tian, G. AU - Goodman, L. AU - Fan, W. AU - Zhang, J. AU - Li, J. AU - Zhang, J. PY - 2008 DA - 2008// TI - The diploid genome sequence of an Asian individual JO - Nature VL - 456 UR - https://doi.org/10.1038/nature07484 DO - 10.1038/nature07484 ID - Wang2008 ER - TY - JOUR AU - Buggs, R. J. A. AU - Chamala, S. AU - Wu, W. E. I. AU - Gao, L. U. AU - May, G. D. AU - Schnable, P. S. AU - Soltis, D. E. AU - Soltis, P. S. AU - Barbazuk, W. B. PY - 2010 DA - 2010// TI - Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping JO - Mol Ecol VL - 19 UR - https://doi.org/10.1111/j.1365-294X.2009.04469.x DO - 10.1111/j.1365-294X.2009.04469.x ID - Buggs2010 ER - TY - JOUR AU - Chen, S. AU - Yang, P. AU - Jiang, F. AU - Wei, Y. AU - Ma, Z. AU - Kang, L. PY - 2010 DA - 2010// TI - De novo analysis of transcriptome dynamics in the Migratory Locust during the development of phase traits JO - PLoS ONE VL - 5 UR - https://doi.org/10.1371/journal.pone.0015633 DO - 10.1371/journal.pone.0015633 ID - Chen2010 ER - TY - JOUR AU - Feldmeyer, B. AU - Wheat, C. AU - Krezdorn, N. AU - Rotter, B. AU - Pfenninger, M. PY - 2011 DA - 2011// TI - Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-317 DO - 10.1186/1471-2164-12-317 ID - Feldmeyer2011 ER - TY - JOUR AU - Wang, X. -. W. AU - Luan, J. -. B. AU - Li, J. -. M. AU - Bao, Y. -. Y. AU - Zhang, C. -. X. AU - Liu, S. -. S. PY - 2010 DA - 2010// TI - De novo characterization of a whitefly transcriptome and analysis of its gene expression during development JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-400 DO - 10.1186/1471-2164-11-400 ID - Wang2010 ER - TY - JOUR AU - Wang, Z. AU - Fang, B. AU - Chen, J. AU - Zhang, X. AU - Luo, Z. AU - Huang, L. AU - Chen, X. AU - Li, Y. PY - 2010 DA - 2010// TI - De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas) JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-726 DO - 10.1186/1471-2164-11-726 ID - Wang2010 ER - TY - JOUR AU - Mizrachi, E. AU - Hefer, C. AU - Ranik, M. AU - Joubert, F. AU - Myburg, A. PY - 2010 DA - 2010// TI - De novo assembled expressed gene catalog of a fast-growing eucalyptus tree produced by Illumina mRNA-seq JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-681 DO - 10.1186/1471-2164-11-681 ID - Mizrachi2010 ER - TY - JOUR AU - Garg, R. AU - Patel, R. K. AU - Tyagi, A. K. AU - Jain, M. PY - 2011 DA - 2011// TI - De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification JO - DNA Res VL - 18 UR - https://doi.org/10.1093/dnares/dsq028 DO - 10.1093/dnares/dsq028 ID - Garg2011 ER - TY - JOUR AU - Eckert, A. J. AU - Bower, A. D. AU - GonzÁLez-MartÍNez, S. C. AU - Wegrzyn, J. L. AU - Coop, G. AU - Neale, D. B. PY - 2010 DA - 2010// TI - Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae) JO - Mol Ecol VL - 19 UR - https://doi.org/10.1111/j.1365-294X.2010.04698.x DO - 10.1111/j.1365-294X.2010.04698.x ID - Eckert2010 ER - TY - JOUR AU - Holliday, J. A. AU - Ritland, K. AU - Aitken, S. N. PY - 2010 DA - 2010// TI - Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis) JO - New Phytologist VL - 188 UR - https://doi.org/10.1111/j.1469-8137.2010.03380.x DO - 10.1111/j.1469-8137.2010.03380.x ID - Holliday2010 ER - TY - JOUR AU - Hao, D. C. AU - Ge, G. AU - Xiao, P. AU - Zhang, Y. AU - Yang, L. PY - 2011 DA - 2011// TI - The first insight in to the tissue specific Taxus transcriptome via Illumina second generation JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0021220 DO - 10.1371/journal.pone.0021220 ID - Hao2011 ER - TY - JOUR AU - Farmer, E. E. AU - Ryan, C. A. PY - 1990 DA - 1990// TI - Interplant communication: airborne methyl jasmonate induces synthesis of proteinase inhibitors in plant leaves JO - PNAS VL - 87 UR - https://doi.org/10.1073/pnas.87.19.7713 DO - 10.1073/pnas.87.19.7713 ID - Farmer1990 ER - TY - JOUR AU - Halitschke, R. AU - Baldwin, I. PY - 2004 DA - 2004// TI - Jasmonates and related compounds in plant-insect interactions JO - J Plant Growth Regul VL - 23 UR - https://doi.org/10.1007/s00344-004-0037-z DO - 10.1007/s00344-004-0037-z ID - Halitschke2004 ER - TY - JOUR AU - Howe, G. A. PY - 2004 DA - 2004// TI - Jasmonates as signals in the wound response JO - J Plant Growth Regul VL - 23 UR - https://doi.org/10.1007/s00344-004-0030-6 DO - 10.1007/s00344-004-0030-6 ID - Howe2004 ER - TY - JOUR AU - Meyer, A. AU - Miersch, O. AU - Büttner, C. AU - Dathe, W. AU - Sembdner, G. PY - 1984 DA - 1984// TI - Occurrence of the plant growth regulator jasmonic acid in plants JO - J Plant Growth Regul VL - 3 UR - https://doi.org/10.1007/BF02041987 DO - 10.1007/BF02041987 ID - Meyer1984 ER - TY - JOUR AU - Mithöfer, A. AU - Maitrejean, M. AU - Boland, W. PY - 2004 DA - 2004// TI - Structural and biological diversity of cyclic octadecanoids, jasmonates, and mimetics JO - J Plant Growth Regul VL - 23 UR - https://doi.org/10.1007/s00344-004-0034-2 DO - 10.1007/s00344-004-0034-2 ID - Mithöfer2004 ER - TY - JOUR AU - Moreira, X. AU - Sampedro, L. AU - Zas, R. PY - 2009 DA - 2009// TI - Defensive responses of Pinus pinaster seedlings to exogenous application of methyl jasmonate: concentration effect and systemic response JO - Environ Exp Bot VL - 67 UR - https://doi.org/10.1016/j.envexpbot.2009.05.015 DO - 10.1016/j.envexpbot.2009.05.015 ID - Moreira2009 ER - TY - JOUR AU - Reymond, P. AU - Farmer, E. E. PY - 1998 DA - 1998// TI - Jasmonate and salicylate as global signals for defense gene expression JO - Curr Opin Plant Biol VL - 1 UR - https://doi.org/10.1016/S1369-5266(98)80264-1 DO - 10.1016/S1369-5266(98)80264-1 ID - Reymond1998 ER - TY - JOUR AU - Schaller, F. AU - Schaller, A. AU - Stintzi, A. PY - 2004 DA - 2004// TI - Biosynthesis and metabolism of jasmonates JO - J Plant Growth Regul VL - 23 UR - https://doi.org/10.1007/s00344-004-0047-x DO - 10.1007/s00344-004-0047-x ID - Schaller2004 ER - TY - JOUR AU - Chen, H. AU - Wilkerson, C. G. AU - Kuchar, J. A. AU - Phinney, B. S. AU - Howe, G. A. PY - 2005 DA - 2005// TI - Jasmonate-inducible plant enzymes degrade essential amino acids in the herbivore midgut JO - PNAS VL - 102 UR - https://doi.org/10.1073/pnas.0509026102 DO - 10.1073/pnas.0509026102 ID - Chen2005 ER - TY - JOUR AU - Thaler, J. S. PY - 1999 DA - 1999// TI - Jasmonate-inducible plant defences cause increased parasitism of herbivores JO - Nature VL - 399 UR - https://doi.org/10.1038/21420 DO - 10.1038/21420 ID - Thaler1999 ER - TY - JOUR AU - Kang, J. -. H. AU - Baldwin, I. T. PY - 2006 DA - 2006// TI - Isolation and characterization of the threonine deaminase promoter in Nicotiana attenuata JO - Plant Sci VL - 171 UR - https://doi.org/10.1016/j.plantsci.2006.05.005 DO - 10.1016/j.plantsci.2006.05.005 ID - Kang2006 ER - TY - JOUR AU - De Rosa Jr, V. E. AU - Nogueira, F. T. S. AU - Menossi, M. AU - Ulian, E. C. AU - Arruda, P. PY - 2005 DA - 2005// TI - Identification of methyl jasmonate-responsive genes in sugarcane using cDNA arrays JO - Braz J Plant Physiol VL - 17 UR - https://doi.org/10.1590/S1677-04202005000100014 DO - 10.1590/S1677-04202005000100014 ID - De Rosa Jr2005 ER - TY - JOUR AU - Fäldt, J. AU - Martin, D. AU - Miller, B. AU - Rawat, S. AU - Bohlmann, J. PY - 2003 DA - 2003// TI - Traumatic resin defense in norway spruce (Picea abies): methyl jasmonate-induced terpene synthase gene expression, and cDNA cloning and functional characterization of (+)-3-carene synthase JO - Plant Mol Biol VL - 51 UR - https://doi.org/10.1023/A:1020714403780 DO - 10.1023/A:1020714403780 ID - Fäldt2003 ER - TY - JOUR AU - Fujimoto, T. AU - Tomitaka, Y. AU - Abe, H. AU - Tsuda, S. AU - Futai, K. AU - Mizukubo, T. PY - 2011 DA - 2011// TI - Expression profile of jasmonic acid-induced genes and the induced resistance against the root-knot nematode (Meloidogyne incognita) in tomato plants (Solanum lycopersicum) after foliar treatment with methyl jasmonate JO - J Plant Physiol VL - 168 UR - https://doi.org/10.1016/j.jplph.2010.12.002 DO - 10.1016/j.jplph.2010.12.002 ID - Fujimoto2011 ER - TY - JOUR AU - Nahar, K. AU - Kyndt, T. AU - De Vleesschauwer, D. AU - Höfte, M. AU - Gheysen, G. PY - 2011 DA - 2011// TI - The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice JO - Plant Physiol VL - 157 UR - https://doi.org/10.1104/pp.111.177576 DO - 10.1104/pp.111.177576 ID - Nahar2011 ER - TY - JOUR AU - Pauwels, L. AU - Morreel, K. AU - De Witte, E. AU - Lammertyn, F. AU - Van Montagu, M. AU - Boerjan, W. AU - Inzé, D. AU - Goossens, A. PY - 2008 DA - 2008// TI - Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells JO - PNAS VL - 105 UR - https://doi.org/10.1073/pnas.0711203105 DO - 10.1073/pnas.0711203105 ID - Pauwels2008 ER - TY - JOUR AU - Sasaki, Y. AU - Asamizu, E. AU - Shibata, D. AU - Nakamura, Y. AU - Kaneko, T. AU - Awai, K. AU - Amagai, M. AU - Kuwata, C. AU - Tsugane, T. AU - Masuda, T. PY - 2001 DA - 2001// TI - Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways JO - DNA Res VL - 8 UR - https://doi.org/10.1093/dnares/8.4.153 DO - 10.1093/dnares/8.4.153 ID - Sasaki2001 ER - TY - JOUR AU - Schenk, P. M. AU - Kazan, K. AU - Wilson, I. AU - Anderson, J. P. AU - Richmond, T. AU - Somerville, S. C. AU - Manners, J. M. PY - 2000 DA - 2000// TI - Coordinated plant defense responses in Arabidopsis revealed by microarray analysis JO - PNAS VL - 97 UR - https://doi.org/10.1073/pnas.97.21.11655 DO - 10.1073/pnas.97.21.11655 ID - Schenk2000 ER - TY - JOUR AU - Kunkel, B. N. AU - Brooks, D. M. PY - 2002 DA - 2002// TI - Cross talk between signaling pathways in pathogen defense JO - Curr Opin Plant Biol VL - 5 UR - https://doi.org/10.1016/S1369-5266(02)00275-3 DO - 10.1016/S1369-5266(02)00275-3 ID - Kunkel2002 ER - TY - JOUR AU - Koornneef, A. AU - Pieterse, C. M. J. PY - 2008 DA - 2008// TI - Cross Talk in Defense Signaling JO - Plant Physiol VL - 146 UR - https://doi.org/10.1104/pp.107.112029 DO - 10.1104/pp.107.112029 ID - Koornneef2008 ER - TY - JOUR AU - Wu, J. Q. AU - Baldwin, I. T. PY - 2009 DA - 2009// TI - Herbivory-induced signalling in plants: perception and action JO - Plant Cell Environ VL - 32 UR - https://doi.org/10.1111/j.1365-3040.2009.01943.x DO - 10.1111/j.1365-3040.2009.01943.x ID - Wu2009 ER - TY - JOUR AU - Miller, B. AU - Madilao, L. L. AU - Ralph, S. AU - Bohlmann, J. PY - 2005 DA - 2005// TI - Insect-Induced Conifer Defense. White Pine Weevil and Methyl Jasmonate Induce Traumatic Resinosis, de Novo Formed Volatile Emissions, and Accumulation of Terpenoid Synthase and Putative Octadecanoid Pathway Transcripts in Sitka Spruce JO - Plant Physiol VL - 137 UR - https://doi.org/10.1104/pp.104.050187 DO - 10.1104/pp.104.050187 ID - Miller2005 ER - TY - JOUR AU - Franceschi, V. R. AU - Krekling, T. AU - Christiansen, E. PY - 2002 DA - 2002// TI - Application of methyl jasmonate on Picea abies (Pinaceae) stems induces defense-related responses in phloem and xylem JO - Am J Bot VL - 89 UR - https://doi.org/10.3732/ajb.89.4.578 DO - 10.3732/ajb.89.4.578 ID - Franceschi2002 ER - TY - JOUR AU - Zeneli, G. AU - Krokene, P. AU - Christiansen, E. AU - Krekling, T. AU - Gershenzon, J. PY - 2006 DA - 2006// TI - Methyl jasmonate treatment of mature Norway spruce (Picea abies) trees increases the accumulation of terpenoid resin components and protects against infection by Ceratocystis polonica, a bark beetle-associated fungus JO - Tree Physiol VL - 26 UR - https://doi.org/10.1093/treephys/26.8.977 DO - 10.1093/treephys/26.8.977 ID - Zeneli2006 ER - TY - JOUR AU - Erbilgin, N. AU - Krokene, P. AU - Christiansen, E. AU - Zeneli, G. AU - Gershenzon, J. PY - 2006 DA - 2006// TI - Exogenous application of methyl jasmonate elicits defenses in Norway spruce (Picea abies) and reduces host colonization by the bark beetle Ips typographus JO - Oecologia VL - 148 UR - https://doi.org/10.1007/s00442-006-0394-3 DO - 10.1007/s00442-006-0394-3 ID - Erbilgin2006 ER - TY - BOOK AU - Xu, W. PY - 2006 DA - 2006// TI - Study on the induced resistance of Larix gmelinii to insects PB - PhD thesis CY - Northeast Forestry University, School of Forestry ID - Xu2006 ER - TY - BOOK AU - Meng, Z. J. PY - 2008 DA - 2008// TI - Study on the induced resistance of two larch species treated with exogenous jasmonates to insects PB - PhD thesis CY - Northeast Forestry University, School of Forestry ID - Meng2008 ER - TY - JOUR AU - Campbell, M. M. AU - Ellis, B. E. PY - 1992 DA - 1992// TI - Fungal elicitor-mediated responses in pine cell cultures: induction of phenylpropanoid metabolism JO - Planta VL - 186 UR - https://doi.org/10.1007/BF00195322 DO - 10.1007/BF00195322 ID - Campbell1992 ER - TY - JOUR AU - Qin, Y. F. AU - Fang, H. M. AU - Tian, Q. N. AU - Bao, Z. X. AU - Lu, P. AU - Zhao, J. M. AU - Mai, J. AU - Zhu, Z. Y. AU - Shu, L. L. AU - Zhao, L. AU - Chen, S. J. AU - Liang, F. AU - Zhang, Y. Z. AU - Zhang, S. T. PY - 2011 DA - 2011// TI - Transcriptome profiling and digital gene expression by deep-sequencing in normal/regenerative tissues of planarian Dugesia japonica JO - Genomics VL - 97 UR - https://doi.org/10.1016/j.ygeno.2011.02.002 DO - 10.1016/j.ygeno.2011.02.002 ID - Qin2011 ER - TY - JOUR AU - Pan, Q. AU - Shai, O. AU - Lee, L. J. AU - Frey, B. J. AU - Blencowe, B. J. PY - 2008 DA - 2008// TI - Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing JO - Nat Genet VL - 40 UR - https://doi.org/10.1038/ng.259 DO - 10.1038/ng.259 ID - Pan2008 ER - TY - JOUR AU - Hegedűs, Z. AU - Zakrzewska, A. AU - Ágoston, V. C. AU - Ordas, A. AU - Rácz, P. AU - Mink, M. AU - Spaink, H. P. AU - Meijer, A. H. PY - 2009 DA - 2009// TI - Deep sequencing of the zebrafish transcriptome response to mycobacterium infection JO - Mol Immunol VL - 46 UR - https://doi.org/10.1016/j.molimm.2009.07.002 DO - 10.1016/j.molimm.2009.07.002 ID - Hegedűs2009 ER - TY - JOUR AU - Audic, S. AU - Claverie, J. -. M. PY - 1997 DA - 1997// TI - The significance of digital gene expression profiles JO - Genome research VL - 7 ID - Audic1997 ER - TY - BOOK AU - Lieutier, F. PY - 2002 DA - 2002// TI - Mechanisms of resistance in conifers and bark beetle attack strategies PB - Mechanisms and Deployment of Resistance in Trees to insects CY - Springer UR - https://doi.org/10.1007/0-306-47596-0_2 DO - 10.1007/0-306-47596-0_2 ID - Lieutier2002 ER - TY - JOUR AU - Franceschi, V. R. AU - Krokene, P. AU - Christiansen, E. AU - Krekling, T. PY - 2005 DA - 2005// TI - Anatomical and chemical defenses of conifer bark against bark beetles and other pests JO - New Phytologist VL - 167 UR - https://doi.org/10.1111/j.1469-8137.2005.01436.x DO - 10.1111/j.1469-8137.2005.01436.x ID - Franceschi2005 ER - TY - JOUR AU - Boerjan, W. AU - Ralph, J. AU - Baucher, M. PY - 2003 DA - 2003// TI - Lignin biosynthesis JO - Annu Rev Plant Biol VL - 54 UR - https://doi.org/10.1146/annurev.arplant.54.031902.134938 DO - 10.1146/annurev.arplant.54.031902.134938 ID - Boerjan2003 ER - TY - JOUR AU - Dixon, R. A. AU - Achnine, L. AU - Kota, P. AU - Liu, C. J. AU - Reddy, M. S. S. AU - Wang, L. J. PY - 2002 DA - 2002// TI - The phenylpropanoid pathway and plant defence – a genomics perspective JO - Mol Plant Pathol VL - 3 UR - https://doi.org/10.1046/j.1364-3703.2002.00131.x DO - 10.1046/j.1364-3703.2002.00131.x ID - Dixon2002 ER - TY - JOUR AU - Whetten, R. W. AU - Sederoff, R. R. PY - 1992 DA - 1992// TI - Phenylalanine ammonia-lyase from loblolly pine – purification of the enzyme and isolation of complementary DNA clones JO - Plant Physiol VL - 98 UR - https://doi.org/10.1104/pp.98.1.380 DO - 10.1104/pp.98.1.380 ID - Whetten1992 ER - TY - JOUR AU - Butland, S. L. AU - Chow, M. L. AU - Ellis, B. E. PY - 1998 DA - 1998// TI - A diverse family of phenylalanine ammonia-lyase genes expressed in pine trees and cell cultures JO - Plant Mol Biol VL - 37 UR - https://doi.org/10.1023/A:1005941228246 DO - 10.1023/A:1005941228246 ID - Butland1998 ER - TY - JOUR AU - Grönberg, B. H. AU - Hietala, A. M. AU - Haahtela, K. PY - 2009 DA - 2009// TI - Analysing scots pine defence-related transcripts and fungal DNA levels in seedlings single- or dual-inoculated with endophytic and pathogenic Rhizoctonia species JO - Forest Pathology VL - 39 UR - https://doi.org/10.1111/j.1439-0329.2009.00596.x DO - 10.1111/j.1439-0329.2009.00596.x ID - Grönberg2009 ER - TY - JOUR AU - Li, L. G. AU - Popko, J. L. AU - Zhang, X. H. AU - Osakabe, K. AU - Tsai, C. J. AU - Joshi, C. P. AU - Chiang, V. L. PY - 1997 DA - 1997// TI - A novel multifunctional O-methyltransferase implicated in a dual methylation pathway associated with lignin biosynthesis in loblolly pine JO - PNAS VL - 94 UR - https://doi.org/10.1073/pnas.94.10.5461 DO - 10.1073/pnas.94.10.5461 ID - Li1997 ER - TY - JOUR AU - Chiron, H. AU - Drouet, A. AU - Claudot, A. C. AU - Eckerskorn, C. AU - Trost, M. AU - Heller, W. AU - Ernst, D. AU - Sandermann, H. PY - 2000 DA - 2000// TI - Molecular cloning and functional expression of a stressi-induced multifunctional O-methyltransferase with pinosylvin methyltransferase activity from Scots pine (Pinus sylvestris L.) JO - Plant Mol Biol VL - 44 UR - https://doi.org/10.1023/A:1026507707186 DO - 10.1023/A:1026507707186 ID - Chiron2000 ER - TY - JOUR AU - Koutaniemi, S. AU - Toikka, M. M. AU - Kärkönen, A. AU - Mustonen, M. AU - Lundell, T. AU - Simola, L. K. AU - Kilpeläinen, I. A. AU - Teeri, T. H. PY - 2005 DA - 2005// TI - Characterization of basic p-coumaryl and coniferyl alcohol oxidizing peroxidases from a lignin-forming Picea abies suspension culture JO - Plant Mol Biol VL - 58 UR - https://doi.org/10.1007/s11103-005-5345-6 DO - 10.1007/s11103-005-5345-6 ID - Koutaniemi2005 ER - TY - JOUR AU - Nicholson, R. L. AU - Hammerschmidt, R. PY - 1992 DA - 1992// TI - Phenolic compounds and their role in disease resistance JO - Annu Rev Phytopathol VL - 30 UR - https://doi.org/10.1146/annurev.py.30.090192.002101 DO - 10.1146/annurev.py.30.090192.002101 ID - Nicholson1992 ER - TY - JOUR AU - Brignolas, F. AU - Lacroix, B. AU - Lieutier, F. AU - Sauvard, D. AU - Drouet, A. AU - Claudot, A. -. C. AU - Yart, A. AU - Berryman, A. A. AU - Christiansen, E. PY - 1995 DA - 1995// TI - Induced responses in phenolic metabolism in two norway spruce clones after wounding and inoculations with Ophiostoma polonicum, a bark beetle-associated fungus JO - Plant Physiol VL - 109 ID - Brignolas1995 ER - TY - JOUR AU - Huber, D. P. W. AU - Ralph, S. AU - Bohlmann, J. PY - 2004 DA - 2004// TI - Genomic hardwiring and phenotypic plasticity of terpenoid-based defenses in conifers JO - J Chem Ecol VL - 30 UR - https://doi.org/10.1007/s10886-004-7942-2 DO - 10.1007/s10886-004-7942-2 ID - Huber2004 ER - TY - JOUR AU - Adomas, A. AU - Heller, G. AU - Li, G. S. AU - Olson, A. AU - Chu, T. M. AU - Osborne, J. AU - Craig, D. AU - Van Zyl, L. AU - Wolfinger, R. AU - Sederoff, R. AU - Dean, R. A. AU - Stenlid, J. AU - Finlay, R. AU - Asiegbu, F. O. PY - 2007 DA - 2007// TI - Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion JO - Tree Physiol VL - 27 UR - https://doi.org/10.1093/treephys/27.10.1441 DO - 10.1093/treephys/27.10.1441 ID - Adomas2007 ER - TY - JOUR AU - Ralph, S. G. AU - Yuen, H. AU - Friedmann, M. AU - Aeschliman, D. AU - Zeznik, J. A. AU - Nelson, C. C. AU - Butterfield, Y. N. AU - Kirkpatrick, R. AU - Ritland, K. AU - Bohlmann, J. PY - 2006 DA - 2006// TI - Conifer defence agaist insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-scale changes of the host transcriptome JO - Plant Cell Environ VL - 29 UR - https://doi.org/10.1111/j.1365-3040.2006.01532.x DO - 10.1111/j.1365-3040.2006.01532.x ID - Ralph2006 ER - TY - JOUR AU - Weng, J. K. AU - Chapple, C. PY - 2010 DA - 2010// TI - The origin and evolution of lignin biosynthesis JO - New Phytologist VL - 187 UR - https://doi.org/10.1111/j.1469-8137.2010.03327.x DO - 10.1111/j.1469-8137.2010.03327.x ID - Weng2010 ER - TY - JOUR AU - Anterola, A. M. AU - Jeon, J. H. AU - Davin, L. B. AU - Lewis, N. G. PY - 2002 DA - 2002// TI - Transcriptional control of monolignol biosynthesis in Pinus taeda – factors affecting monolignol ratios and carbon allocation in phenylpropanoid metabolism JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M112051200 DO - 10.1074/jbc.M112051200 ID - Anterola2002 ER - TY - JOUR AU - Ralph, S. AU - Park, J. Y. AU - Bohlmann, J. AU - Mansfield, S. D. PY - 2006 DA - 2006// TI - Dirigent proteins in conifer defense: gene discovery, phylogeny, and differential wound- and insect-induced expression of a family of DIR and DIR-like genes in spruce (Picea spp.) JO - Plant Mol Biol VL - 60 UR - https://doi.org/10.1007/s11103-005-2226-y DO - 10.1007/s11103-005-2226-y ID - Ralph2006 ER - TY - JOUR AU - Sircar, D. AU - Mukherjee, C. AU - Beuerle, T. AU - Beerhues, L. AU - Mitra, A. PY - 2011 DA - 2011// TI - Characterization of p-hydroxybenzaldehyde dehydrogenase, the final enzyme of p-hydroxybenzoic acid biosynthesis in hairy roots of Daucus carota JO - Acta Physiologiae Plantarum VL - 33 UR - https://doi.org/10.1007/s11738-011-0723-y DO - 10.1007/s11738-011-0723-y ID - Sircar2011 ER - TY - JOUR AU - Hu, Z. AU - Zhang, W. AU - Shen, Y. AU - Fu, H. AU - Su, X. AU - Zhang, Z. PY - 2009 DA - 2009// TI - Activities of lipoxygenase and phenylalanine ammonia lyase in poplar leaves induced by insect herbivory and volatiles JO - J Forestry Res VL - 20 UR - https://doi.org/10.1007/s11676-009-0063-6 DO - 10.1007/s11676-009-0063-6 ID - Hu2009 ER - TY - JOUR AU - Franceschi, V. R. AU - Krekling, T. AU - Berryman, A. A. AU - Christiansen, E. PY - 1998 DA - 1998// TI - Specialized phloem parenchyma cells in Norway spruce (Pinaceae) bark are an important site of defense reactions JO - Am J Bot VL - 85 UR - https://doi.org/10.2307/2446529 DO - 10.2307/2446529 ID - Franceschi1998 ER - TY - JOUR AU - Fenwick, G. R. AU - Heaney, R. K. AU - Mullin, W. J. AU - VanEtten, C. H. PY - 1982 DA - 1982// TI - Glucosinolates and their breakdown products in food and food plants JO - CRC Crit Rev Food Sci Nutr VL - 18 UR - https://doi.org/10.1080/10408398209527361 DO - 10.1080/10408398209527361 ID - Fenwick1982 ER - TY - JOUR AU - Kliebenstein, D. J. PY - 2004 DA - 2004// TI - Secondary metabolites and plant/environment interactions: a view through Arabidopsis thaliana tinged glasses JO - Plant Cell Environ VL - 27 UR - https://doi.org/10.1111/j.1365-3040.2004.01180.x DO - 10.1111/j.1365-3040.2004.01180.x ID - Kliebenstein2004 ER - TY - JOUR AU - Kliebenstein, D. J. AU - Figuth, A. AU - Mitchell-Olds, T. PY - 2002 DA - 2002// TI - Genetic architecture of plastic methyl jasmonate responses in Arabidopsis thaliana JO - Genetics VL - 161 ID - Kliebenstein2002 ER - TY - JOUR AU - Farmer, E. E. AU - Ryan, C. A. PY - 1992 DA - 1992// TI - Octadecanoid precursors of jasmonic acid activate the synthesis of wound-inducible proteinase inhibitors JO - The Plant Cell Online VL - 4 UR - https://doi.org/10.1105/tpc.4.2.129 DO - 10.1105/tpc.4.2.129 ID - Farmer1992 ER - TY - JOUR AU - Creelman, R. A. AU - Mullet, J. E. PY - 1995 DA - 1995// TI - Jasmonic acid distribution and action in plants: regulation during development and response to biotic and abiotic stress JO - PNAS VL - 92 UR - https://doi.org/10.1073/pnas.92.10.4114 DO - 10.1073/pnas.92.10.4114 ID - Creelman1995 ER - TY - JOUR AU - Titarenko, E. AU - Rojo, E. AU - Leon, J. AU - Sanchez, J. J. PY - 1997 DA - 1997// TI - Jasmonic acid-dependent and-independent signaling pathways control wound-induced gene activation in Arabidopsis thaliana JO - Plant Physiol VL - 115 UR - https://doi.org/10.1104/pp.115.2.817 DO - 10.1104/pp.115.2.817 ID - Titarenko1997 ER - TY - JOUR AU - Wang, L. AU - Allmann, S. AU - Wu, J. AU - Baldwin, I. T. PY - 2008 DA - 2008// TI - Comparisons of lipoxygenase3-and jasmonate-resistant4/6-silenced plants reveal that jasmonic acid and jasmonic acid-amino acid conjugates play different roles in herbivore resistance of Nicotiana attenuata JO - Plant Physiol VL - 146 UR - https://doi.org/10.1104/pp.107.109264 DO - 10.1104/pp.107.109264 ID - Wang2008 ER - TY - JOUR AU - Feussner, I. AU - Wasternack, C. PY - 2002 DA - 2002// TI - The lipoxygenase pathway JO - Annu Rev Plant Biol VL - 53 UR - https://doi.org/10.1146/annurev.arplant.53.100301.135248 DO - 10.1146/annurev.arplant.53.100301.135248 ID - Feussner2002 ER - TY - JOUR AU - Turner, J. G. AU - Ellis, C. AU - Devoto, A. PY - 2002 DA - 2002// TI - The jasmonate signal pathway JO - Plant Cell Online VL - 14 ID - Turner2002 ER - TY - JOUR AU - Meng, Z. AU - Yan, S. C. AU - Yang, C. P. AU - Jin, H. AU - Hu, X. PY - 2011 DA - 2011// TI - Behavioural responses of Dendrolimus superans and Anastatus japonicus to chemical defences induced by application of jasmonic acid on larch seedlings JO - Scand J Forest Res VL - 26 UR - https://doi.org/10.1080/02827581.2010.533689 DO - 10.1080/02827581.2010.533689 ID - Meng2011 ER - TY - JOUR AU - Kolomiets, M. V. AU - Chen, H. AU - Gladon, R. J. AU - Braun, E. J. AU - Hannapel, D. J. PY - 2000 DA - 2000// TI - A leaf lipoxygenase of potato induced specifically by pathogen infection JO - Plant Physiol VL - 124 UR - https://doi.org/10.1104/pp.124.3.1121 DO - 10.1104/pp.124.3.1121 ID - Kolomiets2000 ER - TY - JOUR AU - Jaakola, L. AU - Pirttilä, A. AU - Halonen, M. AU - Hohtola, A. PY - 2001 DA - 2001// TI - Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit JO - Mol Biotechnol VL - 19 UR - https://doi.org/10.1385/MB:19:2:201 DO - 10.1385/MB:19:2:201 ID - Jaakola2001 ER - TY - CHAP AU - Iseli, C. AU - Jongeneel, C. V. AU - Bucher, P. PY - 1999 DA - 1999// TI - ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences BT - Proc Int Conf Intell Syst Mol Biol ID - Iseli1999 ER - TY - JOUR AU - Morrissy, A. S. AU - Morin, R. D. AU - Delaney, A. AU - Zeng, T. AU - McDonald, H. AU - Jones, S. AU - Zhao, Y. AU - Hirst, M. AU - Marra, M. A. PY - 2009 DA - 2009// TI - Next-generation tag sequencing for cancer gene expression profiling JO - Genome research VL - 19 UR - https://doi.org/10.1101/gr.094482.109 DO - 10.1101/gr.094482.109 ID - Morrissy2009 ER - TY - JOUR AU - Hoen PAC, T. AU - Ariyurek, Y. AU - Thygesen, H. H. AU - Vreugdenhil, E. AU - Vossen, R. H. A. M. AU - Menezes, R. X. AU - Boer, J. M. PY - 2008 DA - 2008// TI - Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn705 DO - 10.1093/nar/gkn705 ID - Hoen PAC2008 ER - TY - CHAP AU - Benjamini, Y. AU - Yekutieli, D. PY - 2001 DA - 2001// TI - The control of the false discovery rate in multiple testing under dependency BT - Annals of statistics ID - Benjamini2001 ER -