Table 3 Statistics of DGE sequencing
Summary | Â | CK | JA | MeJA |
|---|---|---|---|---|
Raw Data | Total | 3508779 | 5959646 | 3508306 |
Raw Data | Distinct Tag | 252431 | 405541 | 302418 |
Clean Tag | Total number | 3366354 | 5682475 | 3308622 |
Clean Tag | Distinct Tag number | 114240 | 140268 | 107570 |
All Tag Mapping to Gene | Total number | 1215015 | 1915314 | 1179280 |
All Tag Mapping to Gene | Total % of clean tag | 36.09% | 33.71% | 35.64% |
All Tag Mapping to Gene | Distinct Tag number | 47520 | 51376 | 38662 |
All Tag Mapping to Gene | Distinct Tag % of clean tag | 41.60% | 36.63% | 35.94% |
Unambiguous Tag Mapping to Gene | Total number | 1202951 | 1900711 | 1166300 |
Unambiguous Tag Mapping to Gene | Total % of clean tag | 35.73% | 33.45% | 35.25% |
Unambiguous Tag Mapping to Gene | Distinct Tag number | 47135 | 50986 | 38356 |
Unambiguous Tag Mapping to Gene | Distinct Tag % of clean tag | 41.26% | 36.35% | 35.66% |
All Tag-mapped Genes | number | 19443 | 20411 | 17544 |
All Tag-mapped Genes | % of ref genes | 37.36% | 39.22% | 33.71% |
Unambiguous Tag-mapped Genes | number | 19153 | 20114 | 17285 |
Unambiguous Tag-mapped Genes | % of ref genes | 36.80% | 38.65% | 33.21% |
Unknown Tag | Total number | 2151339 | 3767161 | 2129342 |
Unknown Tag | Total % of clean tag | 63.91% | 66.29% | 64.36% |
Unknown Tag | Distinct Tag number | 66720 | 88892 | 68908 |
Unknown Tag | Distinct Tag % of clean tag | 58.40% | 63.37% | 64.06% |