From: Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies
 | Type | Gene(s) | Exon(s)1 | Read support2 | Pred. in | Val.3 | Relative Coverage4 |
---|---|---|---|---|---|---|---|
1 | fusion | PML/RARA | e3/e3 | 192 | A08823 | WGS | 27.8%/40.0% |
2 | fusion | RARA/PML | e2/e4 | 276 | A08823 | WGS | 33.1%/33.2% |
3 | fusion | TMEM14B/TMEM14C | 3′-utr/3′-utr | 110 | A08823 | Failed MI | 18.8%/9.8% |
4 | PTD | MLL | e3-e6 | 80 | A08878 | WGS | 28.2% |
5 | PTD | SEC62 | e3-e7 | 40 / 69 | both | No WGS, RT-PCR | 5.0%/8.2%5 |
6 | ITD | ACADVL | e1 | 236 | A08823 | WGS | 27.7% |
7 | ITD | ACIN1 | e6 | 259 / 655 | both | WGS | 61.9%/80.4%5 |
8 | ITD | AKAP2 | e2 | 61 | A08878 | WGS | 33.6% |
9 | ITD | DNHD1 | e21 | 76 | A08878 | WGS | 99.1% |
10 | ITD | FLT36 | e14 | 268 | A08823 | WGS | 21.8% |
11 | ITD | FLT36 | e14 | 950 | A08878 | WGS | 19.6% |
12 | ITD | FOXP1 | 3′-utr | 64 | A08878 | WGS | 19.6% |
13 | ITD | HSPBP1 | e3 | 56 | A08878 | WGS | 17.8% |
14 | ITD | KIAA1211 | e8 | 44 | A08823 | WGS | 51.3% |
15 | ITD | MRPS34 | e1,i1 | 52 | A08823 | WGS | 40.5% |
16 | ITD | PIEZO1 | e32 | 620 | A08878 | WGS | 57.0% |
17 | ITD | SND1 | e1 | 370 | A08823 | WGS | 9.3% |
18 | ITD | SSPO | e74 | 35 | A08878 | WGS | 40.3% |