Table 2 Characterization of Barnacle ITD predictions in A08823 and A08878
From: Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies
Gene(s) | Exon(s)1 | Dataset | Length (nt)2,3 | Repeat Expansion? | Concordant dbSNP v135 ID(s) | |
|---|---|---|---|---|---|---|
6 | ACADVL | e1 | A08823 | 15 (IF) | No | rs66549614, rs3835013, rs6145976 |
7 | ACIN1 | e6 | both | 6 (IF) | Yes | rs34293824, rs5807202, rs34870944, rs78930189,rs3077646 |
8 | AKAP2 | e2 | A08878 | 6 (IF) | Yes | rs77728978 |
9 | DNHD1 | e21 | A08878 | 11 + 1 (IF) | No | rs11270441, rs35685553, rs11268490, rs35369957 |
10 | FLT3 | e14 | A08823 | 48 (IF) | No | none |
11 | FLT3 | e14 | A08878 | 42 + 3 (IF) | No | none |
12 | FOXP1 | 3′-utr | A08878 | 6 (IF) | No | rs67554413 |
13 | HSPBP1 | e3 | A08878 | 9 (IF) | Yes | rs3040014, rs71743637, rs10701478, rs71927276 |
14 | KIAA1211 | e8 | A08823 | 15 + 3 (IF) | Yes | rs71921617, rs11276076, rs67121617 |
15 | MRPS34 | e1,i1 | A08823 | 4 (FS4) | No | rs4027362, rs33993627,rs34595082 |
16 | PIEZO1 | e32 | A08878 | 6 (IF) | Yes | rs11281795, rs71707279 |
17 | SND1 | e1 | A08823 | 21 (IF) | No | none |
18 | SSPO | e74 | A08878 | 5 (FS) | Yes | none |