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Table 1 Effector repertoire of X. citri subsp. citri A w 12879 (Xcaw12879), X. citri subsp . citri str. 306 (XccA306) , X. fuscans subsp. aurantifolii str. ICPB 11122 (XauB) and X. fuscans subsp. aurantifolii str. ICPB 10535 (XauC)

From: Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range

Effector class

Xcaw12879

XccA306

XauB

XauC

Pfam domains

References

AvrBs2

XCAW_00465

XAC0076

XAUB_16770

XAUC_23650

Glycerophosphoryl diester phosphodiesterase

[22]

PthA (AvrBs3, TAL)

XCAW_b00018 (PthAw1)

XACa0022 (PthA1)

XAUB_40130

XAUC_22430

Transcriptional activator, nuclear localization

[23]

XACa0039 (PthA2)

XAUC_24060

XCAW_b00026 (pthAw2)

XACb0015 (PthA3)

XAUB_28490

XAUC_09900

XACb0065 (PthA4)

XAUC_43080

XopA (Hpa1/HpaG)

XCAW_00826

XAC0416

XAUB_19280

XAUC_43660

-

[24]

XopE1 (AvrXacE1)

XCAW_00686

XAC0286

XAUB_37010

XAUC_37580

Putative transglutaminase

[25]

XopE3 (AvrXacE2)

XCAW_03515

XAC3224

XAUB_14680

XAUC_00040

Putative transglutaminase

[26]

XopF2

XCAW_0138Ψ

XAC2785 Ψ

XAUB_07540Ψ

XAUC_21000Ψ

-

[27]

XopI

XCAW_03828

XAC0754

XAUB_39080

XAUC_07100

F-box protein

[28]

XopK

XCAW_03372

XAC3085

XAUB_34090

XAUC_12520

-

[29]

XopL

XCAW_03376

XAC3090

XAUB_34130

XAUC_02900/XAUC_12488Ψ

LRR protein

[30]

XopQ

XCAW_04706

XAC4333

XAUB_10220

XAUC_14670

Inosine uridine nucleoside N-ribohydrolase

[27]

XopR

XCAW_00677

XAC0277

XAUB_36920

XAUC_37490

-

[29]

XopV

XCAW_03980

XAC0601

XAUB_23140

XAUC_21260

-

[29]

XopX

XCAW_00956

XAC0543

XAUB_14760

XAUC_20690

-

[31]

XopZ1

XCAW_01815

XAC2009

XAUB_11532/XAUB_13710Ψ

XAUC_25915

-

[26]

XopAD

XCAW_00082

XAC4213

XAUB_02510

XAUC_34870

SKWP repeat protein

[32, 33]

XopAI

XCAW_01099

XAC3230

XAUB_26830

XAUC_23780

Putative ADP- ribosyltransferase

[34]

XopAK

XCAW_04369

XAC3666

XAUB_02580

XAUC_32490

-

[33]

XopAP

XCAW_03269

XAC2990

XAUB_13980

XAUC_08760

-

[35]

HpaA

XCAW_00810

XAC0400

XAUB_19430

XAUC_19990

T3S control protein

[36]

HrpW (PopW)

XCAW_03200

XAC2922

XAUB_19460

XAUC_20020

Pectate Lyase

[37]

XopAQ

XCAW_03514

Not annotated*

Not annotated**

-

-

[35]

XopE2 (AvrXacE3, AvrXccE1)

XCAW_03520

XACb0011

XAUB_31660

-

Putative transglutaminase

[25]

XopN

XCAW_01387

XAC2786

XAUB_07520

-

ARM/HEAT repeat

[38]

XopP

XCAW_01310

XAC1208

XAUB_06720

-

-

[27]

XopAE (HpaF/HpaG)

XCAW_00801

XAC0393

XAUB_19500

-

LRR protein

[39]

XopC2

XCAW_01311Ψ

XAC1209/XAC1210Ψ

  

Haloacid dehalogenase-like hydrolase

[39]

XopAF (AvrXv3)

XCAW_b00003

-

XAUB_02310

XAUC_00300

-

[40]

XopAG (AvrGf1/AvrGf2)

XCAW_00608

-

XAUB_03570 Ψ

XAUC_04910

-

[7]

XopF1(Hpa4)

XCAW_00804/XCAW_00805Ψ

-

 

XAUC_31730Ψ

 

[30]

XopB

-

-

XAUB_09070/XAUB_14842 Ψ

XAUC_00260

-

[41]

XopE4

-

-

XAUB_23330

XAUC_31730

Putative transglutaminase

[10]

XopJ1

-

-

XAUB_20830

XAUC_08850

C55-family cysteine protease or Ser/Thr acetyltransferase

[27]

  1. Ψ Inactive/Pseudogene.
  2. * Located between XAC3223 and XAC3224 from 3,797,415 bp to 3,797,702 bp.
  3. ** Located between XAUB_14670 & XAUB_14680 on NZ_ACPX01000163 from 23,262 bp to 23,549 bp.