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Figure 1 | BMC Genomics

Figure 1

From: De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana

Figure 1

Agave tequilana , A. deserti , and an overview of their respective transcriptomes. (A) Cultivated A. tequilana in Jalisco, Mexico. (B) A. deserti (foreground) in Riverside County, California, USA. (C) Plot of the fraction of unique 25-mers over indicated read depth (log10 scale). (D) Density plot of GC content of agave transcript contigs vs. contigs from contamination and commensal organisms. (E) Density plots of A. deserti and A. tequilana contig lengths. Note log10 scale. Peaks at 150 and 250 nt represent single reads or paired-end reads, respectively, that were not assembled into larger contigs (Methods). (F) Density plot of locus RPKM values for coding (dark shading) and non-coding (light shading) loci.

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