Figure 2

Comparison of the A. tequilana Rnnotator de novo assembly to additional datasets and to the A. deserti de novo assembly. (A) Comparison of the Agave tequilana Rnnotator assembly to Pacific Biosciences cDNA sequencing, A. tequilana sequences in GenBank, and an alternative de novo A. tequilana assembly built by McKain et al., 2012 [27]. See text for details. (B) Comparisons between the A. tequilana and A. deserti assemblies. Inset–key for alignment properties. Total number of sequences compared to A. tequilana Rnnotator contigs (n) is noted in each bar chart (n), and number of sequences in each alignment class is noted above bar. (C) Histograms of the fractional alignment lengths between A. deserti and A. tequilana. Symbol || delimits query dataset from subject dataset.