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Table 4 Assembly genes implicated in ginsenosides biosynthesis

From: The root transcriptome for North American ginseng assembled and profiled across seasonal development

Gene

Alias

EC

KO

Annotation

Pq9090

AACT

2.3.1.9

K00626

Acetyl-CoA acetyltransferase

Pq24050

HMGS

2.3.3.10

K01641

HMG-CoA synthase

Pq28460

HMGR

1.1.1.34

K00021

HMG-CoA reductase (NADPH)

Pq48060

MK

2.7.1.36

K00869

Mevalonate kinase

Pq106070

PMK

2.7.4.2

K00938

Phosphomevalonate kinase, mvaK2

Pq40790

MDD

4.1.1.33

K01597

Mevalonate diphosphate decarboxylase

Pq10790

IDI

5.3.3.2

K01823

Isopentenyl-diphosphate-isomerase

Pq57960

FPS/DMAPP

2.5.1.1

K14066

Farnesyl diphosphate synthase/IPP-dimethylallyltransferase

Pq25790

FPS/DMAPP

2.5.1.1.1/10

K00787

Farnesyl diphosphate synthase/IPP-dimethylallyltransferase

Pq130580

FPS/DMAPP

2.5.1.1.1/10

K13789

Farnesyl diphosphate synthase/IPP-dimethylallyltransferase

Pq44950

FPS/DMAPP

2.5.1.1.1/10

K13789

Farnesyl diphosphate synthase/IPP-dimethylallyltransferase

Pq28280

SQS

2.5.1.21

K00801

Squalene synthase

Pq129610

SQE1

1.14.13.132

K00511

Squalene epoxidase 1

Pq7190

SQE1

1.14.13.132

K00511

Squalene epoxidase 1

Pq41740

DS

4.2.1.125

K15817

Dammarenediol-II synthase

Pq137240

AS

  

β-amyrin synthase

Pq133900

AS

  

β-amyrin synthase

Pq215750

AS

  

β-amyrin synthase

Pq104900

AS

  

β-amyrin synthase

Pq194830

AS

  

β-amyrin synthase

Pq75200

P450

  

Cytochrome P450, CYP73A5

Pq7360

P450

  

Cytochrome P450, CYP71B25

Pq9780

P450

  

Cytochrome P450, CYP75B1

Pq10460

P450

  

Cytochrome P450, CYP71A26

Pq142430

P450

  

Cytochrome P450

Pq108220

P450

  

Cytochrome P450, CYP710A1

Pq137680

GT

  

UDP-Glycosyltransferase

Pq47050

GT

  

Glycosyltransferase, GAUT9

Pq177130

GT

  

Glycosyltransferase, GAUT14

Pq117050

GT

  

UDP-Glycosyltransferase

Pq158770

GT

  

α 1,4-Glycosyltransferase

Pq10160

GT

  

UDP-Glycosyltransferase, 71C4

Pq315*

GT

  

UDP-Glycosyltransferase

  1. * This gene possessed 96 splice variants and may be an artefact of assembly.