Table 2 The results of the combined SiMES and SINDI data analysis and the single-SNP p-values from the original article
From: Combined genotype and haplotype tests for region-based association studies
| Â | COL8A2 | ZNF469-LOC100128913 | RXRA-COL5A1 | COL8A2- TRAPPC3 | C7orf42 |
|---|---|---|---|---|---|
Chromosome | 1 | 16 | 9 | 1 | 7 |
Number of SNPs | 4 | 27 | 73 | 3 | 6 |
Genotype SKAT | 3.68E-13 | 2.13E-15 | 4.06E-12 | 2.63E-08 | 2.55E-07 |
Haplotype SKAT | 5.58E-10 | 0.149394 | 0.79 | 2.78E-05 | 0.005 |
MinP-val | 3.68E-13 | 4.22E-15 | 8.11E-12 | 4E-08 | 4.96E-07 |
SumP-val | 1.77E-11 | 9.44E-10 | 7.90E-06 | 4E-08 | 2.60E-05 |
Single-SNP analysis* | rs96067: 5.4E-13 | rs9938149: 1.63E-16 rs12447690: 1.92E-14 | rs1536478: 3.5E-9 | - | - |