From: Whole transcriptome RNA-Seq allelic expression in human brain
Brain region | RINa | Total reads | Reads mapped (standard alignment) | Reads mapped (allele-switched alignment)b | Reads mapped (IUPAC alignment) |
---|---|---|---|---|---|
BA10 (frontopolar cortex) | 5.9 | 36,449,577 | 30,223,143 (83%) | 30,222,857 (83%) | 30,314,666 (83%) |
BA22 (superior temporal cortex) | 7.1 | 34,975,593 | 29,506,035 (84%) | 29,505,770 (84%) | 29,594,225 (84%) |
BA24 (anterior cingulate cortex) | 6.5 | 43,992,783 | 36,562,760 (83%) | 36,562,530 (83%) | 36,698,983 (83%) |
Insular cortex | 5.0 | 38,872,288 | 32,777,310 (84%) | 32,777,059 (84%) | 32,879,072 (84%) |
Amygdala | 6.9 | 41,172,320 | 34,304,449 (83%) | 34,304,246 (83%) | 34,398,572 (83%) |
Hippocampus | 6.7 | 48,277,234 | 40,944,589 (85%) | 40,944,279 (85%) | 41,012,249 (85%) |
Putamen | 6.8 | 30,881,648 | 25,861,872 (84%) | 25,861,690 (84%) | 25,958,094 (84%) |
Cerebellum | 6.9 | 39,047,957 | 32,918,344 (84%) | 32,918,093 (84%) | 32,938,662 (84%) |
Raphe nuclei | 6.9 | 41,231,369 | 33,963,780 (82%) | 33,963,585 (82%) | 34,091,575 (83%) |