From: Whole transcriptome RNA-Seq allelic expression in human brain
Sample name | Age | Racea | Sex | Cocaine use | Smoker | PMIb | RINc | Sequencing platform | Total reads | Reads mapped (IUPAC alignment) |
---|---|---|---|---|---|---|---|---|---|---|
DLPFC1 | 32 | AA | M | + | + | 18 | 7.3 | SOLiD 5500 | 94,129,888 | 71,736,257 (76%) |
DLPFC2 | 49 | C/H | M | + | + | 15 | 6.6 | SOLiD 5500 | 98,880,442 | 73,446,303 (74%) |
DLPFC3d | 20 | AA | M | - | - | 12 | 6.7 | SOLiD 5500 | 92,458,538 | 69,487,318 (75%) |
DLPFC4 | 34 | C | M | - | + | 11.5 | 6.8 | SOLiD 5500 | 243,400,656 | 104,099,874 (43%) |
DLPFC5 | 39 | C | M | + | - | 12 | 8.2 | SOLiD 4 | 49,940,133 | 37,200,670 (74%) |
DLPFC6 | 25 | AA | M | + | - | 20.5 | 8.2 | SOLiD 4 | 48,399,474 | 37,741,267 (78%) |
DLPFC7 | 42 | C | F | + | - | 14 | 7.1 | SOLiD 4 | 46,956,017 | 35,661,219 (76%) |
DLPFC8 | 28 | C | M | - | - | 11 | 9.1 | SOLiD 4 | 53,947,324 | 39,909,693 (74%) |
DLPFC9 | 35 | C | M | - | - | 12 | 8.3 | SOLiD 4 | 60,022,719 | 44,510,882 (74%) |
DLPFC10 | 28 | C | M | + | - | 8 | 8.1 | SOLiD 4 | 258,721,328 | 200,550,177 (78%) |
DLPFC11 | 35 | C | F | + | + | 11 | 6.4 | SOLiD 4 | 48,215,511 | 37,349,598 (77%) |
DLPFC12 | 39 | C | M | - | + | 11 | 7.7 | SOLiD 4 | 290,364,386 | 227,982,821 (79%) |
DLPFC13 | 34 | C | M | - | - | 22 | 7.3 | SOLiD 4 | 94,036,538 | 56,435,396 (60%) |
DLPFC14 | 32 | B/H | F | - | - | 16 | 9.4 | SOLiD 4 | 48,174,311 | 37,197,681 (77%) |