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Table 2 Tissue characteristics and mapping statistics for 14 dorsolateral prefrontal cortex samples

From: Whole transcriptome RNA-Seq allelic expression in human brain

Sample name

Age

Racea

Sex

Cocaine use

Smoker

PMIb

RINc

Sequencing platform

Total reads

Reads mapped (IUPAC alignment)

DLPFC1

32

AA

M

+

+

18

7.3

SOLiD 5500

94,129,888

71,736,257 (76%)

DLPFC2

49

C/H

M

+

+

15

6.6

SOLiD 5500

98,880,442

73,446,303 (74%)

DLPFC3d

20

AA

M

-

-

12

6.7

SOLiD 5500

92,458,538

69,487,318 (75%)

DLPFC4

34

C

M

-

+

11.5

6.8

SOLiD 5500

243,400,656

104,099,874 (43%)

DLPFC5

39

C

M

+

-

12

8.2

SOLiD 4

49,940,133

37,200,670 (74%)

DLPFC6

25

AA

M

+

-

20.5

8.2

SOLiD 4

48,399,474

37,741,267 (78%)

DLPFC7

42

C

F

+

-

14

7.1

SOLiD 4

46,956,017

35,661,219 (76%)

DLPFC8

28

C

M

-

-

11

9.1

SOLiD 4

53,947,324

39,909,693 (74%)

DLPFC9

35

C

M

-

-

12

8.3

SOLiD 4

60,022,719

44,510,882 (74%)

DLPFC10

28

C

M

+

-

8

8.1

SOLiD 4

258,721,328

200,550,177 (78%)

DLPFC11

35

C

F

+

+

11

6.4

SOLiD 4

48,215,511

37,349,598 (77%)

DLPFC12

39

C

M

-

+

11

7.7

SOLiD 4

290,364,386

227,982,821 (79%)

DLPFC13

34

C

M

-

-

22

7.3

SOLiD 4

94,036,538

56,435,396 (60%)

DLPFC14

32

B/H

F

-

-

16

9.4

SOLiD 4

48,174,311

37,197,681 (77%)

  1. aRace/Ethnicity: AA African American, C Caucasian, H Hispanic.
  2. bPMI Post-mortem interval, in hours.
  3. cRIN RNA Integrity Number, measured by Agilent Bioanalyzer 2100.
  4. dDLPFC originates from same sample as the 9 brain regions in Table 1.