Table 3 Genes with AEI ≥1.5-fold following stringent correction ^a

AHNAK

6

2

1.69

2.46

protein-coding mRNA

rs9645690 (5.94 × 10^-3)

ANKRD26

5

2

1.62

1.70

pseudogene associated

rs12779247 (8.53 × 10^-8)*

AP2M1

8

2

1.72

2.20

protein-coding mRNA

rs2668193 (2.77 × 10^-3)

AP3S2

3

2

1.50

2.00

protein-coding mRNA

rs4932145 (4.61 × 10^-9)*

APOL2

4

2

1.57

1.97

protein-coding mRNA

rs8136336 (1.03 × 10^-3)

ATP2B4

8

2

1.96

2.16

protein-coding mRNA

rs3753036 (2.31 × 10^-3)

SESN3

4

2

1.66

2.06

protein-coding mRNA

rs684856 (3.79 × 10^-4)*

C12orf5

6

2

1.54

2.27

protein-coding mRNA

rs10849038 (4.98 × 10^-3)

CASD1

6

2

1.53

1.61

protein-coding mRNA

rs2374735 (2.83 × 10^-18)*

CCDC25

9

2

1.59

1.60

pseudogene associated

rs17477326 (5.35 × 10^-4)*

CCNT2

6

2

1.67

1.67

pseudogene associated

rs12470730 (1.67 × 10^-2)

CCPG1

8

2

1.93

2.01

protein-coding mRNA

rs11071185 (8.14 × 10^-4)*

CCT5

5

2

1.61

1.77

pseudogene associated

rs606490 (5.66 × 10^-4)*

CLCC1

7

2

1.67

1.70

protein-coding mRNA

rs7542414 (1.29 × 10^-3)

CNOT1

7

2

1.85

1.85

protein-coding mRNA

rs11866002 (4.24 × 10^-7)*

DOCK4

6

2

1.57

1.72

homology with DOCK3

rs29465 (4.47 × 10^-3)

EFNA5

3

2

1.70

2.00

protein-coding mRNA

rs352602 (1.04 × 10^-4)*

GABRB1

5

2

1.62

1.68

homology with other GABRB family members

N/A

GLS

8

2

2.22

2.29

protein-coding mRNA

rs13029532 (4.23 × 10^-2)

HIPK2

10

3

1.51

2.70

ambiguity in genome assembly

rs11761839 (1.61 × 10^-2)

KALRN

10

3

1.67

2.67

protein-coding mRNA

rs9873910 (1.43 × 10^-4)*

KCNJ16

2

2

1.70

2.39

protein-coding mRNA

rs12940454 (1.89 × 10^-3)

KDM5B

4

2

1.52

1.64

protein-coding mRNA

N/A

KIAA1826

4

2

1.83

2.16

protein-coding mRNA

rs2249950 (9.68 × 10^-3)

LINC00461

4

2

1.62

2.50

long intergenic ncRNA

N/A

LMO7

10

2

1.77

2.10

protein-coding mRNA

rs1323565 (1.91 × 10^-4)*

LOC729799

3

2

2.01

2.18

pseudogene associated

N/A

MYCBP2

7

2

1.54

1.79

protein-coding mRNA

rs1927405 (1.01 × 10^-2)

NGRN

2

2

1.59

3.09

pseudogene associated

rs1543116 (4.88 × 10^-3)

NHP2L1

3

2

1.56

3.21

pseudogene associated

rs17377643 (9.41 × 10^-3)

NIN

9

2

1.53

2.00

protein-coding mRNA

rs10483610 (3.61 × 10^-3)

NIP7

2

2

1.72

1.75

pseudogene associated

rs1127231 (2.02x10^-3)

NRIP3

10

2

1.65

2.22

protein-coding mRNA

rs10840166 (1.17 × 10^-3)

NRSN1

5

2

1.71

1.98

protein-coding mRNA

N/A

OSTM1

5

2

1.58

2.62

protein-coding mRNA

N/A

PARG

10

2

1.61

1.66

pseudogene associated

rs2002273 (2.18 × 10^-1)

PAR-SN

2

2

2.87

3.23

imprinted and high homology with multiple genes and known RNA editing

rs2732020 (4.86 × 10^-3)

PDIA3P

9

3

2.54

5.98

pseudogene associated

N/A

PTAR1

4

2

1.70

2.00

protein-coding mRNA

rs11139519 (4.86 × 10^-2)

RGMB

4

2

1.70

2.28

protein-coding mRNA

rs2545680 (8.60 × 10^-14)*

RPRD1A

4

2

1.52

1.59

pseudogene associated

rs9951407 (1.18 × 10^-2)

SDCCAG8

2

2

1.67

2.12

protein-coding mRNA

rs2484639 (8.14 × 10^-6)*

SEC22B

14

5

4.42

10.24

pseudogene associated

N/A

SETD2

3

2

1.61

1.62

protein-coding mRNA

rs1979736 (4.36 × 10^-4)*

SLC25A12

3

3

1.79

2.40

protein-coding mRNA

rs4280427 (2.08 × 10^-2)

SPOCK2

7

2

1.61

1.68

protein-coding mRNA

rs7894516 (6.53 × 10^-2)

STRBP

3

2

1.50

1.52

protein-coding mRNA and ncRNA

rs700085 (1.50 × 10^-2)

SYBU

4

2

1.81

1.87

protein-coding mRNA

rs1954713 (5.07 × 10^-2)

TBL1XR1

5

2

1.61

1.93

pseudogene associated

rs6765337 (5.48 × 10^-3)

TP53BP1

7

2

1.51

2.25

protein-coding mRNA

rs12912505 (1.03 × 10^-1)

UBB

9

2

1.51

1.54

pseudogene associated

rs11869614 (1.03 × 10^-1)

WDR82

3

2

1.53

1.92

pseudogene associated

rs730050 (1.53 × 10^-2)