Table 4 RNA editing across brain regions and across individuals
From: Whole transcriptome RNA-Seq allelic expression in human brain
Gene | Genomic positiona | Position in gene | Editing across regionsb | Editing across individualsc | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | # Regions displaying editing | Avg. Read Depth | % Edited (S.E.M.) | # Individuals displaying editing | Avg. Read Depth | % Edited (S.E.M.) |
CCDC75/EIF2AK2 | chr2:37327702 | intergenic | 8 | 11.4 | 59.8 (8.0) | 8 | 22.2 | 32.0 (8.7) |
CTSB | chr8:11702542 | 3′UTR | 10 | 16.8 | 99.4 (0.6) | 8 | 11.0 | 87.3 (4.0) |
FTX | chrX:73499965 | exonic (ncRNA) | 9 | 62 | 31.8 (2.8) | 10 | 116.3 | 27.1 (2.2) |
GRIA2 | chr4:158257875 | exonic (non-synonymous) | 10 | 32.3 | 88.9 (4.6) | 13 | 56.0 | 97.5 (0.6) |
GRIA2 | chr4:158257879 | exonic (synonymous) | 8 | 35.9 | 21.0 (2.7) | 8 | 75.5 | 16.4 (0.8) |
GRIK2 | chr6:102337689 | exonic (non-synonymous) | 10 | 19.2 | 44.5 (3.9) | 13 | 18.9 | 37.2 (3.8) |
GRIK2 | chr6:102337702 | exonic (non-synonymous) | 9 | 18.2 | 62.0 (3.7) | 13 | 17.1 | 63.9 (5.7) |
MTRNR2L1 | chr17:22021971 | intergenic | 10 | 1595.7 | 98.0 (0.1) | 10 | 1796.7 | 96.9 (0.5) |
PAR-SN | chr15:25227816 | exonic (ncRNA) | 9 | 11.6 | 67.8 (8.2) | 13 | 29.6 | 79.4 (2.0) |
PAR-SN | chr15:25227838 | exonic (ncRNA) | 7 | 12.1 | 43.5 (5.3) | 11 | 26.1 | 35.4 (2.6) |
PAR-SN | chr15:25227854 | exonic (ncRNA) | 5 | 14.4 | 25.4 (5.6) | 8 | 26.6 | 22.1 (2.8) |
TRUB2 | chr9:131071533 | 3′UTR | 5 | 11.2 | 54.6 (9.9) | 11 | 15.1 | 59.8 (4.6) |