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Table 1 Cis -elements in the Gm Hsp 20 promoters – their occurrence and position

From: Genome-wide analysis of the Hsp 20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses

MatInspector – PLACE – PlantCARE

Gm Hsp 20 gene candidates

a CCAAT

a TATA box

a W-box

TA-rich region

GmHsp 16.4C

−14 -110 -280 -333 -377

−29

____

____

GmHsp 17.7A

____

−44

____

____

GmHsp 16.2A

−2 -105 -165 -166 -262 -356 -471 -472

____

−17 -323

____

GmHsp 17.3A

−86 -158 - 290–299 - 447–468 -473

−30

−263 -264

____

GmHsp 28.6

−676

____

−66

____

GmHsp 17.9A

−372

____

____

−309

GmHsp 15.9

−119 -120 -300 -488

____

____

____

GmHsp 26.0

−296 -395

−32

____

____

GmHsp 17.8A

−196 -253 -290 -409

−32

−120

____

GmHsp 26.1

−17 -186

−28

−5

____

GmHsp 17.1

−154 -229 -357

____

−41 -170 -169 -396

____

GmHsp 21.6

n/a

n/a

n/a

n/a

GmHsp 18.2A

−36- 67–306 -330 -406

−19

−315 -165 -493

____

GmHsp 17.6A

−178 -301

____

____

____

GmHsp 18.5A

−442

−25

____

____

GmHsp 17.5A

−401 -202

____

____

____

GmHsp 17.5B

n/a

n/a

n/a

n/a

GmHsp 17.5C

−313

____

−215

____

GmHsp 17.5D

−491

−28

−306

 

GmHsp 17.4A

−188 -219 -238 -275 -312

____

____

____

GmHsp 17.3B

−85 -106 -116 -135- 249 -347

____

____

____

GmHsp 25.7

−13 -284

−40

−87

____

GmHsp 25.3

−1 -40 -91

−29

−496

____

GmHsp 22.4

−253 -370

−19

−406

−4

GmHsp 16.4D

−42 -103 -247 -278 -425 -440

−8

____

____

GmHsp 27.3

−109

−27

−96

____

GmHsp 23.8

−705

____

−69 -292

____

GmHsp 15.7B

−28 -130 -159

____

____

____

GmHsp 17.5E

−215 -304 -494

−26

____

____

GmHsp 17.6B

−69 -420

____

−4

−178

GmHsp 17.5F

−246 -333 -461

−57

−481 -377

____

GmHsp 18.5B

−260

−24

−331 -437 -464

____

GmHsp 17.4B

−633

____

−198 -342 -398

____

GmHsp 15.2

−725

−24

−442

____

GmHsp 22.2

−326 -397

____

−169 -252 -366

____

GmHsp 17.7B

−176 -218 -377 -493

−26

−288

____

GmHsp 17.9B

−56 -74 -238

−44

−71

−44

GmHsp 17.9C

−952

−32

−240 -390

____

GmHsp 18.0A

−1402

____

−167

____

GmHsp 16.2B

−77 -198 -472

−25

−476

____

GmHsp 15.4

−474

____

____

____

GmHsp 16.4E

____

____

____

____

GmHsp 18.0B

−72 -76 -442

−24

____

____

GmHsp 22.5

−271 -396

−26

____

____

GmHsp 17.9D

−128 -301 -331

−29

−222

____

GmHsp 23.9

n/a

n/a

n/a

n/a

GmHsp 19.5

−50 -157 -293 -300 -341 -452

−35

____

____

GmHsp 22.3B

−103 -221 -308 -320

____

____

____

GmHsp 17.9E

−207 -265 -345 -398 -433

____

−131 -477

____

GmHsp 22.0

____

____

−21

____

GmHsp 28.7

−191 -217 -302 -329

−42

−97 -100 -336

____

Gm Acd 33.0

−46 -134 -252 -256 -454 -474 -488

−34

−533

____

Gm Acd 23.1

−22 -88 -294

−28

−412 -452

−251

  1. The CCAAT, TATA box, W-box and TA-rich positions identified 500 bp upstream of the GmHsp 20 candidates are estimated in relation to the transcription start site. a The results are presented according to MEME, MatInspector and Place software. The TA-rich elements were obtained using the program PlantCare. The abbreviation “n/a” means that the upstream region is not available on Phytozome.