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Table 1 Cis -elements in the Gm Hsp 20 promoters – their occurrence and position

From: Genome-wide analysis of the Hsp 20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses

MatInspector – PLACE – PlantCARE
Gm Hsp 20 gene candidates a CCAAT a TATA box a W-box TA-rich region
GmHsp 16.4C −14 -110 -280 -333 -377 −29 ____ ____
GmHsp 17.7A ____ −44 ____ ____
GmHsp 16.2A −2 -105 -165 -166 -262 -356 -471 -472 ____ −17 -323 ____
GmHsp 17.3A −86 -158 - 290–299 - 447–468 -473 −30 −263 -264 ____
GmHsp 28.6 −676 ____ −66 ____
GmHsp 17.9A −372 ____ ____ −309
GmHsp 15.9 −119 -120 -300 -488 ____ ____ ____
GmHsp 26.0 −296 -395 −32 ____ ____
GmHsp 17.8A −196 -253 -290 -409 −32 −120 ____
GmHsp 26.1 −17 -186 −28 −5 ____
GmHsp 17.1 −154 -229 -357 ____ −41 -170 -169 -396 ____
GmHsp 21.6 n/a n/a n/a n/a
GmHsp 18.2A −36- 67–306 -330 -406 −19 −315 -165 -493 ____
GmHsp 17.6A −178 -301 ____ ____ ____
GmHsp 18.5A −442 −25 ____ ____
GmHsp 17.5A −401 -202 ____ ____ ____
GmHsp 17.5B n/a n/a n/a n/a
GmHsp 17.5C −313 ____ −215 ____
GmHsp 17.5D −491 −28 −306  
GmHsp 17.4A −188 -219 -238 -275 -312 ____ ____ ____
GmHsp 17.3B −85 -106 -116 -135- 249 -347 ____ ____ ____
GmHsp 25.7 −13 -284 −40 −87 ____
GmHsp 25.3 −1 -40 -91 −29 −496 ____
GmHsp 22.4 −253 -370 −19 −406 −4
GmHsp 16.4D −42 -103 -247 -278 -425 -440 −8 ____ ____
GmHsp 27.3 −109 −27 −96 ____
GmHsp 23.8 −705 ____ −69 -292 ____
GmHsp 15.7B −28 -130 -159 ____ ____ ____
GmHsp 17.5E −215 -304 -494 −26 ____ ____
GmHsp 17.6B −69 -420 ____ −4 −178
GmHsp 17.5F −246 -333 -461 −57 −481 -377 ____
GmHsp 18.5B −260 −24 −331 -437 -464 ____
GmHsp 17.4B −633 ____ −198 -342 -398 ____
GmHsp 15.2 −725 −24 −442 ____
GmHsp 22.2 −326 -397 ____ −169 -252 -366 ____
GmHsp 17.7B −176 -218 -377 -493 −26 −288 ____
GmHsp 17.9B −56 -74 -238 −44 −71 −44
GmHsp 17.9C −952 −32 −240 -390 ____
GmHsp 18.0A −1402 ____ −167 ____
GmHsp 16.2B −77 -198 -472 −25 −476 ____
GmHsp 15.4 −474 ____ ____ ____
GmHsp 16.4E ____ ____ ____ ____
GmHsp 18.0B −72 -76 -442 −24 ____ ____
GmHsp 22.5 −271 -396 −26 ____ ____
GmHsp 17.9D −128 -301 -331 −29 −222 ____
GmHsp 23.9 n/a n/a n/a n/a
GmHsp 19.5 −50 -157 -293 -300 -341 -452 −35 ____ ____
GmHsp 22.3B −103 -221 -308 -320 ____ ____ ____
GmHsp 17.9E −207 -265 -345 -398 -433 ____ −131 -477 ____
GmHsp 22.0 ____ ____ −21 ____
GmHsp 28.7 −191 -217 -302 -329 −42 −97 -100 -336 ____
Gm Acd 33.0 −46 -134 -252 -256 -454 -474 -488 −34 −533 ____
Gm Acd 23.1 −22 -88 -294 −28 −412 -452 −251
  1. The CCAAT, TATA box, W-box and TA-rich positions identified 500 bp upstream of the GmHsp 20 candidates are estimated in relation to the transcription start site. a The results are presented according to MEME, MatInspector and Place software. The TA-rich elements were obtained using the program PlantCare. The abbreviation “n/a” means that the upstream region is not available on Phytozome.
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BMC Genomics

ISSN: 1471-2164

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