RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions

Table 3 Genetic diversity between Eutrema groups

74,550 two-allele SNPs differentiate the plant groups and the JGI reference genome from each other. Some SNPs were also unique to only one two-way comparison. All SNPs were identified as variants of the JGI reference so n/a denotes that SNPs unique to comparisons between transcriptomes could not be identified. For inclusion, SNPs detected between groups of transcriptomes had to be supported by more than two SNPs per plant group.

ISSN: 1471-2164