Identification of differential expression genes associated with host selection and adaptation between two sibling insect species by transcriptional profile analysis

Table 1 DGE-tag unique clean tags and tags percentage that map to genes in the four developmental stages of H. armigera and H. assulta

		Embryos	Larva	Pupa	Adult	Total
Raw data	H. armigera	6,202,369	5,766,391	6,126,237	6,021,919	24,116,916
Raw data	H. assulta	6,072,324	6,161,560	6,195,186	5,876,709	24,305,779
Clean tags	H. armigera	6,058,338	5,646,953	5,998,625	5,891,808	23,595,724
Clean tags	H. assulta	5,955,877	6,048,552	6,084,239	5,759,082	23,847,750
Unique clean tags (Uni-tags)	H. armigera	97,646	80,673	89,193	89,330	356,842
Unique clean tags (Uni-tags)	H. assulta	93,672	88,171	88,711	86,860	357,414
Uni-tag mapping to gene	H. armigera	71,623	64,679	64,458	67,385	268,145
Uni-tag mapping to gene	H. assulta	61,518	60,287	55,503	53,283	230,591
Mapping tag ratio (%)	H. armigera	73.35%	80.17%	72.27%	75.43%	75.14%
Mapping tag ratio (%)	H. assulta	65.67%	68.37%	62.57%	61.34%	64.52%
Gene numbers of tag mapping	H. armigera	22,890	21,080	21,987	22,901	88,857
Gene numbers of tag mapping	H. assulta	19,106	19,006	18,340	18,705	75,157
Mapping gene ratio (%)	H. armigera	34.27%	31.56%	32.92%	34.29%
	H. assulta	28.61%	28.46%	27.46%	28.01%

ISSN: 1471-2164