Sample ID | Sample description | Platform | Mapped reads | Filtered reads | Resources |
---|---|---|---|---|---|
BT20 | ER- breast cancer cell line | P/50 | 137897876 | 118362274 | GEO: GSE27003; Sun et al., 2011 [35] |
MDAMB231 | ER- breast cancer cell line | P/50 | 96483262 | 80759008 | Same as above |
MDAMB468 | ER- breast cancer cell line | P/50 | 123622490 | 104468212 | Same as above |
MCF7 | ER + breast cancer cell line | P/50 | 129592066 | 107422464 | Same as above |
BT474 | ER + breast cancer cell line | P/50 | 131597078 | 110877774 | Same as above |
T47D | ER + breast cancer cell line | P/50 | 119708904 | 99784684 | Same as above |
ZR751 | ER + breast cancer cell line | P/50 | 107891488 | 90362316 | Same as above |
MCF10A | Normal breast cell line | P/50 | 125148556 | 108184998 | Same as above |
LNCaP | Prostate cancer cell line | S/35 | 38953595 | 27126677 | GEO: GSE29155; Kim et al., 2011 [33] |
PrEC | Normal prostate cell line | P/35 | 27825207 | 22366081 | Same as above |
LCL-1a | Lymphocyte cell lines | P/36,38 | 64168681 | 54301769 | GEO: GSE25030; Montgomery et al., 2010 [34] |
LCL-2 | Lymphocyte cell lines | P/36,38 | 71571009 | 60017609 | Same as above |
OV-1-prb | Ovarian cancer cell line | P/42 | 75756477 | 69739708 | SRA: ERP000710 [36] |
OV-1-re | Ovarian cancer cell line | P/42 | 95813480 | 89853848 | Same as above |
OV-2-fi | Ovarian cancer cell line | P/42 | 90793509 | 84057374 | Same as above |
OV-2-se | Ovarian cancer cell line | P/42 | 100491160 | 93088808 | Same as above |
OV-3-pr | Ovarian cancer cell line | P/42 | 72611523 | 66647818 | Same as above |
OV-3-re | Ovarian cancer cell line | P/42 | 89393849 | 84067652 | Same as above |
prAd_1c | Prostate adenocarcinoma | S/33 | 32495059 | 23386861 | GEO: GSE24283; Nacu et al., 2011 [9] |
prAd_2 | Prostate adenocarcinoma | S/33 | 34663805 | 24398162 | Same as above |
prAd_3 | Prostate adenocarcinoma | S/33 | 66976637 | 48613865 | Same as above |
prNorm_1 | Normal prostate tissue | S/50,75 | 37201269 | 30394802 | Same as above |
prNorm_2 | Normal prostate tissue | S/50 | 37451643 | 30392995 | Same as above |
prNorm_3 | Normal prostate tissue | S/33 | 33511439 | 25294452 | Same as above |
Brain | Brain tissue | S/50 | 48741218 | 42660318 | Same as above |
Liverd | Liver tissue | S/35 | 31258238 | 26253587 | GEO: GSE17274; Blekhman et al., 2010 [32] |