Skip to main content

Table 2 Statistical analysis on the digital expressions of the exons in different classes

From: Inferring the expression variability of human transposable element-derived exons by linear model analysis of deep RNA sequencing data

Sample

Constitutive exons

Cassette exons

Annotated TE exons

Un-annotated TE exons

 

R

M

p

R

M

p

R

M

p

R

M

p

BT20

0.03

0.98

1.72E-36

0.07

0.91

3.11E-29

0.26

0.38

4.28E-20

0.51

0.07

7 7.43E-20

MDAMB231

0.05

0.98

1.89E-49

0.09

0.9

4.67E-28

0.33

0.42

2.20E-19

0.6

0.07

7.65E-16

MDAMB468

0.04

0.99

4.64E-69

0.08

0.9

9.92E-33

0.28

0.36

8.99E-23

0.58

0.07

3.54E-12

MCF7

0.03

0.99

8.91E-64

0.07

0.89

1.75E-34

0.3

0.31

2.54E-12

0.48

0.07

1.45E-20

BT474

0.03

0.99

3.81E-62

0.08

0.9

4.31E-34

0.36

0.35

6.87E-13

0.53

0.07

1.22E-12

T47D

0.04

0.98

4.33E-26

0.08

0.92

5.72E-34

0.2

0.35

3.00E-31

0.58

0.06

7.08E-16

ZR751

0.04

0.99

7.93E-58

0.08

0.9

1.06E-31

0.29

0.3

3.26E-19

0.6

0.07

6.88E-10

MCF10A

0.04

0.99

2.00E-72

0.09

0.89

2.26E-31

0.28

0.36

8.59E-26

0.6

0.06

4.63E-14

LNCaP

0.09

0.99

4.16E-91

0.16

0.88

6.58E-23

0.39

0.38

2.99E-21

0.7

0.08

4.12E-05

PrEC

0.08

0.99

1.18E-121

0.15

0.86

7.20E-28

0.49

0.33

2.55E-11

0.7

0.08

6.84E-05

LCLs

0.02

0.99

2.92E-136

0.06

0.86

9.98E-35

0.18

0.3

3.05E-24

0.45

0.06

1.00E-15

OV-1-pr

0.02

0.98

9.29E-50

0.05

0.91

4.59E-43

0.23

0.29

3.65E-15

0.39

0.08

1.17E-07

OV-1-re

0.03

1

2.53E-188

0.06

0.84

1.32E-36

0.17

0.3

6.77E-19

0.39

0.08

3.36E-06

OV-2-fi

0.02

0.99

1.29E-153

0.05

0.86

3.86E-35

0.17

0.34

6.15E-16

0.29

0.11

8.54E-07

OV-2-se

0.02

0.99

8.43E-77

0.04

0.89

6.42E-46

0.2

0.3

2.13E-13

0.31

0.09

4.55E-07

OV-3-pr

0.03

0.99

2.01E-162

0.07

0.84

7.23E-42

0.35

0.23

2.60E-08

0.47

0.1

1.19E-01

OV-3-re

0.02

0.99

2.39E-109

0.05

0.87

1.84E-40

0.17

0.27

1.51E-16

0.4

0.08

4.65E-07

prAd_1

0.14

1

1.24E-256

0.25

0.71

1.82E-14

0.57

0.28

2.43E-12

0.81

0.05

2.42E-01

prAd_2

0.12

1.01

7.82E-292

0.22

0.72

6.88E-17

0.6

0.3

7.12E-10

0.79

0.05

2.50E-01

prAd_3

0.07

1.02

0.00E + 00

0.16

0.71

3.15E-19

0.46

0.27

7.33E-13

0.7

0.05

1.83E-02

prNorm_1

0.07

0.99

7.83E-170

0.13

0.83

2.49E-34

0.42

0.3

1.35E-17

0.68

0.06

2.23E-06

prNorm_2

0.07

0.99

1.41E-172

0.12

0.83

2.33E-26

0.4

0.33

1.39E-14

0.65

0.07

2.01E-05

prNorm_3

0.13

1.01

5.47E-288

0.23

0.74

7.63E-16

0.55

0.35

3.49E-12

0.78

0.06

7.63E-02

Brain

0.04

0.99

6.99E-183

0.09

0.84

5.03E-26

0.31

0.31

1.70E-13

0.54

0.08

1.30E-09

Liver

0.08

1

8.84E-124

0.15

0.85

5.08E-28

0.52

0.26

1.19E-06

0.68

0.09

1.67E-01

  1. R: the proportion of exons with no reads mapped to the genomic regions in the alignment among the entire set of exons in the corresponding categories. M: the average of the rescaled RPKMs. p: the p-values for stepwise comparisons (see Results section for details).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us