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Table 1 Description of sequenced samples and the number of segregating SNPs detected from different lines

From: Development of a high density 600K SNP genotyping array for chicken

Line

Breed

Usage

Samples

Analysis

Number of SNPs detected (with quality score ≥20)

B1

Composite

C

10 ♂

Pooled

9,525,306

B2

Composite

C

10 ♂

Pooled

10,760,626

B3

Composite

C

10 ♂

Pooled

9,305,545

B4

Composite

C

10 ♂

Pooled

10,422,420

WEL1

White Leghorn

C

10 ♂

Pooled

8,605,672

WEL2

White Leghorn

C

10 ♀

Pooled

9,900,302

WEL3

White Leghorn

C

10 ♀

Pooled

7,340,262

WEL4

White Leghorn

C

10 ♂

Pooled

7,951,423

WEL5

White Leghorn

C

10 ♂

Pooled

11,139,255

WEL6

White Leghorn

C

3 ♀

Individual

2,630,343

BEL1

White Plymouth Rock

C

10 ♀

Pooled

8,182,562

BEL2

White Plymouth Rock

C

10 ♂

Pooled

7,876,558

BEL3

Rhode Island Red

C

10 ♂

Pooled

11,593,980

BEL4

Rhode Island Red

C

15 ♀

Pooled

3,236,749

BEL5

White Rock

C

15 ♀

Pooled

3,751,628

RI-J

Brown Leghorn

E

10 ♂

Pooled

10,358,702

I1

IAH Inbred 72

E

10 ♀

Pooled

447,683

I2

IAH Inbred P

E

10 ♀

Pooled

1,816,948

I3

IAH Inbred Wellcome

E

10 ♀

Pooled

1,109,100

I4

IAH Inbred N

E

10 ♂

Pooled

1,055,257

I5

IAH Inbred 15 l

E

10 ♀

Pooled

801,052

I6

IAH Inbred 0

E

10 ♀

Pooled

1,395,679

I7

IAH Inbred 61

E

10 ♀

Pooled

803,892

I8

IAH Inbred C

E

10 ♀

Pooled

603,338

  1. (Abbreviations: B, Broiler; WEL, White egg layer; BEL, Brown egg layer; I, Inbred, IAH, Institute for Animal Health; RI, Roslin Institute; C, Commercial; E, Experimental).