From: Development of a high density 600K SNP genotyping array for chicken
Line | Breed | Usage | Samples | Analysis | Number of SNPs detected (with quality score ≥20) |
---|---|---|---|---|---|
B1 | Composite | C | 10 ♂ | Pooled | 9,525,306 |
B2 | Composite | C | 10 ♂ | Pooled | 10,760,626 |
B3 | Composite | C | 10 ♂ | Pooled | 9,305,545 |
B4 | Composite | C | 10 ♂ | Pooled | 10,422,420 |
WEL1 | White Leghorn | C | 10 ♂ | Pooled | 8,605,672 |
WEL2 | White Leghorn | C | 10 ♀ | Pooled | 9,900,302 |
WEL3 | White Leghorn | C | 10 ♀ | Pooled | 7,340,262 |
WEL4 | White Leghorn | C | 10 ♂ | Pooled | 7,951,423 |
WEL5 | White Leghorn | C | 10 ♂ | Pooled | 11,139,255 |
WEL6 | White Leghorn | C | 3 ♀ | Individual | 2,630,343 |
BEL1 | White Plymouth Rock | C | 10 ♀ | Pooled | 8,182,562 |
BEL2 | White Plymouth Rock | C | 10 ♂ | Pooled | 7,876,558 |
BEL3 | Rhode Island Red | C | 10 ♂ | Pooled | 11,593,980 |
BEL4 | Rhode Island Red | C | 15 ♀ | Pooled | 3,236,749 |
BEL5 | White Rock | C | 15 ♀ | Pooled | 3,751,628 |
RI-J | Brown Leghorn | E | 10 ♂ | Pooled | 10,358,702 |
I1 | IAH Inbred 72 | E | 10 ♀ | Pooled | 447,683 |
I2 | IAH Inbred P | E | 10 ♀ | Pooled | 1,816,948 |
I3 | IAH Inbred Wellcome | E | 10 ♀ | Pooled | 1,109,100 |
I4 | IAH Inbred N | E | 10 ♂ | Pooled | 1,055,257 |
I5 | IAH Inbred 15 l | E | 10 ♀ | Pooled | 801,052 |
I6 | IAH Inbred 0 | E | 10 ♀ | Pooled | 1,395,679 |
I7 | IAH Inbred 61 | E | 10 ♀ | Pooled | 803,892 |
I8 | IAH Inbred C | E | 10 ♀ | Pooled | 603,338 |