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Table 3 Summary of annotation of SNPs in 600 K panel to predict the genomic effect

From: Development of a high density 600K SNP genotyping array for chicken

  Count Percent
Total number of SNPs in the panel 580,954  
Annotation possible 492,572 84.79
Annotation result   
Intergenic 266,636 54.13
Intronic 189,128 38.40
Exonic   
 Non-synonymous 9,345 1.90
 Synonymous 12,069 2.45
 Stopgain/stoploss 120 0.02
1 kb Upstream 5,892 1.20
1 kb Downstream 6,456 1.31
UTR3 2,497 0.51
UTR5 302 0.06
Splicing 83 0.02
Non-coding RNA (ncRNA) 44 0.01