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Table 1 IPT gene family in Brassica rapa , along with their molecular details and relevant genomic information

From: Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis)

Gene namea Locusb Chrc Sub- genomed ORF lengthe(bp) Deduced polypeptidef TargetPg Glycosylation Sitesh
      Length (aa) MW (kDa) PI   
BrIPT1-1 Bra004037 A07 MF2 1002 333 37.8 8.91 C/3 0
BrIPT1-2 Bra033933 A02 MF1 1095 364 41.6 8.64 C/1 0
BrIPT2 Bra034366 A04 MF1 1392 463 52.4 5.89 1
BrIPT3-1 Bra040431 A04 MF1 1005 334 37.3 8.11 C/4 2
BrIPT3-2 Bra007728 A09 LF 999 332 37.6 8.4 C/5 1
BrIPT5-1 Bra002204 A10 LF 1005 334 37.9 6.35 1
BrIPT5-2 Bra023701 A02 MF2 996 331 37.6 5.75 1
BrIPT7-1 Bra014968 A07 LF 999 332 37.1 8.68 C/5 1
BrIPT7-2 Bra028326 A01 MF1 906 301 33.6 8.71 C/3 1
BrIPT8-1 Bra037537 A01 MF1 975 324 36.9 8.5 C/2 0
BrIPT8-2 Bra001737 A03 MF2 984 327 37.0 9.26 C/4 1
BrIPT9-1 Bra006535 A03 MF1 1392 463 52.2 7.51 C/5 3
BrIPT9-2 Bra020081 A02 MF2 1395 464 52.2 7.96 C/5 3
  1. aGene Names given to BrIPTs in this work.
  2. bLocus represented by the Brassica rapa genome database.
  3. cChromosomal localization of the BrIPTs and BrCKXs, sca represents scaffold.
  4. dThree sub-genomes of Brassica rapa genome.
  5. eLength of open reading frame in base pairs.
  6. fLength (number of amino acids), molecular weight (kDa), and isoelectric point (pI) of the deduced polypeptide.
  7. gLocalization predicted with TargetP. M, mitochondria; C, chloroplast; S, secretory pathways; “—”, unknown location. (1 to 5), highest to lowest possibility.
  8. hGlycosylation sites are predicted with NetNGly.