Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis)

Table 1 IPT gene family in Brassica rapa , along with their molecular details and relevant genomic information

Gene name^a	Locus^b	Chr^c	Sub- genome^d	ORF length^e(bp)	Deduced polypeptide^f			TargetP^g	Glycosylation Sites^h
					Length (aa)	MW (kDa)	PI
BrIPT1-1	Bra004037	A07	MF2	1002	333	37.8	8.91	C/3	0
BrIPT1-2	Bra033933	A02	MF1	1095	364	41.6	8.64	C/1	0
BrIPT2	Bra034366	A04	MF1	1392	463	52.4	5.89	—	1
BrIPT3-1	Bra040431	A04	MF1	1005	334	37.3	8.11	C/4	2
BrIPT3-2	Bra007728	A09	LF	999	332	37.6	8.4	C/5	1
BrIPT5-1	Bra002204	A10	LF	1005	334	37.9	6.35	—	1
BrIPT5-2	Bra023701	A02	MF2	996	331	37.6	5.75	—	1
BrIPT7-1	Bra014968	A07	LF	999	332	37.1	8.68	C/5	1
BrIPT7-2	Bra028326	A01	MF1	906	301	33.6	8.71	C/3	1
BrIPT8-1	Bra037537	A01	MF1	975	324	36.9	8.5	C/2	0
BrIPT8-2	Bra001737	A03	MF2	984	327	37.0	9.26	C/4	1
BrIPT9-1	Bra006535	A03	MF1	1392	463	52.2	7.51	C/5	3
BrIPT9-2	Bra020081	A02	MF2	1395	464	52.2	7.96	C/5	3

^aGene Names given to BrIPTs in this work.
^bLocus represented by the Brassica rapa genome database.
^cChromosomal localization of the BrIPTs and BrCKXs, sca represents scaffold.
^dThree sub-genomes of Brassica rapa genome.
^eLength of open reading frame in base pairs.
^fLength (number of amino acids), molecular weight (kDa), and isoelectric point (pI) of the deduced polypeptide.
^gLocalization predicted with TargetP. M, mitochondria; C, chloroplast; S, secretory pathways; “—”, unknown location. (1 to 5), highest to lowest possibility.
^hGlycosylation sites are predicted with NetNGly.

ISSN: 1471-2164