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Table 2 CKX gene family in Brassica rapa , along with their molecular details and relevant genomic information

From: Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis)

Gene namea Locusb Chrc Sub- genomed ORF lengthe(bp) Deduced polypeptidef TargetPg Glycosylation
Sitesh
      Length (aa) MW (kDa) PI   
BrCKX1-1 Bra000229 A03 MF2 1323 440 49.3 8.71 3
BrCKX1-2 Bra016928 A04 MF1 1149 382 42.8 7.25 S/5 4
BrCKX1-3 Bra004626 A05 LF 4431 1476 162.7 8.47 M/1 12
BrCKX2-1 Bra036719 A09 MF2 1509 502 55.5 5.96 S/2 5
BrCKX2-2 Bra040677 sca LF 1518 505 55.6 5.62 S/2 5
BrCKX3-1 Bra002777 A10 LF 1101 366 50.0 5.63 C/5 3
BrCKX3-2 Bra035640 A02 MF1 1557 518 58.9 5.62 S/5 3
BrCKX4 Bra024135 A03 MF1 1575 524 58.0 5.71 S/1 5
BrCKX5 Bra015842 A07 LF 1575 524 58.8 5.62 2
BrCKX6 Bra007743 A09 LF 1350 449 50.5 7.3 M/2 4
BrCKX7-1 Bra002371 A10 LF 1578 525 57.9 4.92 5
BrCKX7-2 Bra020157 A02 MF2 1554 517 57.6 5.2 3
  1. aGene Names given to BrCKXs in this work.
  2. bLocus represented by the Brassica rapa genome database.
  3. cChromosomal localization of the BrIPTs and BrCKXs, sca represents scaffold.
  4. dThree sub-genomes of Brassica rapa genome.
  5. eLength of open reading frame in base pairs.
  6. fLength (number of amino acids), molecular weight (kDa), and isoelectric point (pI) of the deduced polypeptide.
  7. gLocalization predicted with TargetP. M, mitochondria; C, chloroplast; S, secretory pathways; “—”, unknown location. (1 to 5), highest to lowest possibility.
  8. hGlycosylation sites are predicted with NetNGly.