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Table 1 Gene features in three Puccinia triticina BAC clones and their alignment to other sequenced Basidiomycetes, P. graminis tritici (Pgt), Melampsora larici-populina (Mlp), and Ustilago maydis (Um)

From: Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements

P. triticina

Pgt Gencxxe Feature*

Pgt protein

Mlp

Um

BLASTX

ORF

 

identities

gene feature**

gene feature

Annotation

1 F16-1

PGTG_12990

54%

35.90208/11

-

Similar to Uhrf1

1 F16-2

PGTG_13012

60%

104.11397

Um_00786

Hypothetical protein

1 F16-3

PGTG_13013

63%

74. 94858

-

Similar to esterase

1 F16-4

PGTG_13016

37%

-

-

Predicted protein

PGTG_18731

64%

1 F16-5

PGTG_13018

67%

49.39112

Um_02725

Similar to molybdopterin synthase sulpherylase

PGTG_18732

68%

1 F16-6

PGTG_13021

68%

74.73436

-

Hypothetical protein

PGTG_18735

64%

1 F16-7

PGTG_13023

56%

74.94864

Um_05085

RAD18

PGTG_18741

56%

1 F16-8

PGTG_13024

64%

74.000024

-

cystein rich SCP-like extracellular protein

PGTG_18744

65%

1 F16-9

PGTG_13026

87%

74.50754/28052

Um_00594

Similar to pyruvate dehydrogenase complex

PGTG_18746

86%

HSP02-1

PGTG_3730/1

79%

22.87674

Um_00736

Conserved protein

HSP02-2

PGTG_6672

48%

68.40205

Um_04270

Aspartyl-tRNA synthetase

HSP02-3

PGTG_3706

30%

-

-

-

HSP02-4

PGTG_3708

69%

2.70587

Um_01555

Mlp HESP-379

HSP02-5

PGTG_3709

83%

2.70587

Um_01555

Mlp HESP-379

HSP02-6

PGTG_3727

100%

2.76428

Um_00703

G-protein beta subunit

HSP02-7

PGTG_3728

68%

2.115002

Um_03486

Nucleotide-binding protein 2

HSP02-8

PGTG_3729

82%

2.46419

Um_05743

Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16

HSP02-9

PGTG_3730

87%

10.115914

Um_04551

Similar to cyclin Ctk2

HSP04-1

PGTG_16978

36%

-

-

Predicted protein

HSP04-2

PGTG_16976

73%

27.88522

Um_00639

Nucleoporin-like

HSP04-3

PGTG_10949

95%

47.72927

Um_02479

60S ribosomal protein

HSP04-4

PGTG_02586

33%

27.88520

-

Heat shock protein 90

HSP04-5

PGTG_14539

41%

-

-

Predicted protein

HSP04-6

PGTG_17549

26%

-

-

Predicted secreted protein

HSP04-7

PGTG_17549

60%

-

-

Predicted secreted protein

HSP04-8

PGTG_17547/8

76%

16.85997

-

Uf-HSP42c

HSP04-9

PGTG_17547/8

71%

16.85997

-

Uf-HSP42c

HSP04-10

PGTG_05205

82%

22.48630

-

Integral membrane protein

HSP04-11

PGTG_17545

52%

-

Um_00662

Predicted protein

HSP04-12

PGTG_17544

83%

23.87824

Um_03820

Vacuolar sorting protein PEP5

HSP04-13

PGTG_17543

62%

23.72100

Um_02189

Hypothetical protein

HSP04-14

PGTG_17537/8

38%

-

-

Predicted protein

  1. * Pgt gene features indicate gene nUmber assigned by the Broad institute during assembly (http://www.broadinstitute.org/annotation/genome/puccinia_group/ verified September 28, 2012). Two nUmbers indicate different scaffolds, as highlighted in Figure 1.
  2. ** Mlp gene features are indicated by scaffold nUmber; gene nUmber as assigned by the Joint Genome Initiative at the Department of Energy (http://genomeportal.jgi-psf.org/Mellp1/Mellp1.home.html verified September 28, 2012).
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BMC Genomics

ISSN: 1471-2164

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