Skip to main content

Table 2 Scaffolding the human genome

From: L_RNA_scaffolder: scaffolding genomes with transcripts

Software Library Scaffold number N50 (kb)
SOAPdenovo 2 kb 27,390 142
5 kb 22,691 162
10 kb 21,444 170
35 kb 10,266 754
SOPRA 2 kb 23,653 158
5 kb 15,476 266
10 kb 27,142 143
35 kb unfinished, cause unclear
Opera 2 kb 24,484 155
5 kb 16,207 261
10 kb 27,412 142
35 kb 3,884 3,726
MIP scaffolder 2 kb 27,247 142
5 kb 26,804 144
10 kb 8,134 716
35 kb 13,295 329
SSPACE 2 kb 27,391 142
5 kb 19,528 180
10 kb 19,790 181
35 kb 5,983 1,457
L_RNA_scaffolder   15,792 283