Table 3 Statistics on inversions, translocations and relocations in 20 scaffoldings of the human genome
From: L_RNA_scaffolder: scaffolding genomes with transcripts
Software | Library | Connections | Consistent | Inversion | Translocation | Relocation | |
|---|---|---|---|---|---|---|---|
| Â | Â | Total | Correctable* | ||||
SOAPdenovo | 2Â kb | 6 | 4 | 0 | 0 | 2 | 2 |
5Â kb | 4,320 | 4,196 | 0 | 0 | 124 | 124 | |
10Â kb | 5,456 | 5,394 | 0 | 0 | 62 | 62 | |
35Â kb | 15,765 | 14,930 | 0 | 82 | 753 | 744 | |
SOPRA | 2Â kb | 3,717 | 3,701 | 0 | 0 | 16 | 8 |
5Â kb | 11,786 | 11,665 | 0 | 0 | 121 | 104 | |
10Â kb | 268 | 236 | 0 | 0 | 32 | 32 | |
35Â kb | unfinished, cause unclear | ||||||
Opera | 2Â kb | 2,917 | 2,886 | 0 | 0 | 31 | 7 |
5Â kb | 11,095 | 10,968 | 0 | 0 | 127 | 101 | |
10Â kb | 29 | 25 | 0 | 0 | 4 | 0 | |
35Â kb | 23,149 | 22,058 | 0 | 224 | 872 | 829 | |
MIP scaffolder | 2Â kb | 129 | 84 | 0 | 1 | 44 | 43 |
5Â kb | 537 | 177 | 0 | 3 | 357 | 355 | |
10Â kb | 12,626 | 12,452 | 0 | 3 | 171 | 171 | |
35Â kb | 13,297 | 9,937 | 1 | 2,232 | 1,137 | 1,019 | |
SSPACE | 2Â kb | 14 | 11 | 0 | 0 | 3 | 3 |
5Â kb | 7,871 | 7,717 | 0 | 3 | 154 | 154 | |
10Â kb | 7,616 | 7,532 | 0 | 0 | 84 | 84 | |
35Â kb | 21,388 | 20,473 | 1 | 5 | 912 | 907 | |
L_RNA_scaffolder | Â | 11,579 | 9,839 | 3 | 625 | 1,123 | 1,022 |