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Table 2 Genes > 20 fold up- or down-regulated in microsclerotia forming (MS +) vs non microsclerotia forming (NoMS) cultures of Verticillium dahliae as revealed by data mining analysis of RNA-seq data

From: RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae

Functional category/gene ID

Expression fold-change* (up-regulated genes)

Protein name/functional annotation

Pigment synthesis

  

VDAG_03665

344.05

Tetrahydroxynaphthalene reductase/melanin biosynthesis

VDAG_03393

231.29

Scytalone dehydratase/melanin biosynthesis

VDAG_04954

165.00

Pigment biosynthesis protein Ayg1

VDAG_00190

136.66

Conidial yellow pigment biosynthesis polyketide synthase/melanin synthesis

VDAG_00189

110.81

Laccase/melanin biosynthesis

VDAG_05181

86.98

Tetrahydroxynaphthalene reductase/melanin biosynthesis

VDAG_00183

40.79

Versicolorin reductase/Polyketide/melanin or aflatoxin biosynthesis

VDAG_00184

23.13

Amino acid adenylation/polyketide synthase

General metabolism

  

VDAG_03650

246.84

Cytochrome P450 2C3/oxidizes steroids, fatty acids, xenobiotics

VDAG_03079

60.61

Catalase/involved in oxidative stress relief

VDAG_09583

20.18

Alcohol oxidase

Transporters

  

VDAG_02154

31.65

RTA1/lipid translocating exporter/drug resistance protein

Cytoskeleton/cell adhesion

  

VDAG_04170

23.44

Keratin associated protein-10

Hypothetical proteins

  

VDAG_01806

251.76

Unknown

VDAG_00621

201.14

Unknown

VDAG_03732

97.43

Unknown

VDAG_02042

67.51

Unknown

VDAG_03078

60.72

Unknown

VDAG_07349

58.42

Unknown

VDAG_02389

42.48

Unknown

VDAG_08973

37.13

Unknown

VDAG_05569

30.02

Unknown

VDAG_05179

29.71

Unknown

VDAG_10456

28.13

Unknown

VDAG_00592

27.17

Unknown

VDAG_04171

24.46

Unknown

VDAG_06885

22.53

Unknown

VDAG_09869

20.88

Unknown

VDAG_00490

20.38

Unknown

Cell death

  

VDAG_00261

72.35

IDI-3/induced during incompatibility/cell death

Functional category/gene ID

Expression fold-change* (down-regulated genes)

Protein name/functional annotation

General metabolism

  

VDAG_02162

46.09

Oviduct spcefic glycoprotein/glycosyl hydrolase family

VDAG_03507

39.98

Aldo-keto reductase/yakc

VDAG_04322

31.66

Acetylcholinesterase/hydrolyze acetylcholine

VDAG_08741

29.50

Endochitinase

VDAG_06138

24.36

6-hydroxy-D-nicotine oxidase

Hypothetical proteins

  

VDAG_03287

272.06

Unknown

VDAG_03216

42.95

Unknown

VDAG_03585

38.51

Unknown

VDAG_04032

36.48

Unknown

  1. *FDR P value <0.05 and fold change > 1.5.