Table 3 Comparisons between RNA-seq data and qPCR results
From: Transcriptomic characterization of cold acclimation in larval zebrafish
Gene symbol | Gene name | Fold change | |
|---|---|---|---|
qPCR | RNA-seq | ||
brf2 | BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like | 3.3 | 5.9 |
per2 | Period homolog 2 | 3.0 | 5.9 |
nrf1 | Nuclear respiratory factor 1 | 2.3 | 2.5 |
fosl1a | FOS-like antigen 1a | 2.1 | 5.1 |
gabpa | GA-binding protein transcription factor, alpha subunit | 2.0 | 2.8 |
per1b | Period homolog 1b | 2.0 | 4.4 |
Per3- total | Period homolog 3 | 2.9 | 5.8 |
per3- P1 | Period homolog 3 | −4.8 | −3.0 |
per3- P2 | Period homolog 3 | 10.0 | 56.3 |
fos | v-fos FBJ murine osteosarcoma viral oncogene homolog | 2.5 | 3.1 |
stk16-j1 | Serine/threonine kinase 16 | 1.4 | 1.5 |
cry-dash | Cryptochrome DASH | 1.3 | 2.3 |
her8a | Hairy-related 8a | −2.5 | −2.1 |
setd7 | SET domain containing (lysine methyltransferase) 7 | −2.7 | −2.5 |
sirt3 | Sirtuin (silent mating type information regulation 2 homolog) 3 | −2.7 | −2.7 |
stc1l | Stanniocalcin 1, like | −2.8 | −2.1 |
nr5a5 | Nuclear receptor subfamily 5, group A, member 5 | −5.7 | −9.4 |