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Table 3 Comparisons between RNA-seq data and qPCR results

From: Transcriptomic characterization of cold acclimation in larval zebrafish

Gene symbol Gene name Fold change
qPCR RNA-seq
brf2 BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like 3.3 5.9
per2 Period homolog 2 3.0 5.9
nrf1 Nuclear respiratory factor 1 2.3 2.5
fosl1a FOS-like antigen 1a 2.1 5.1
gabpa GA-binding protein transcription factor, alpha subunit 2.0 2.8
per1b Period homolog 1b 2.0 4.4
Per3- total Period homolog 3 2.9 5.8
per3- P1 Period homolog 3 −4.8 −3.0
per3- P2 Period homolog 3 10.0 56.3
fos v-fos FBJ murine osteosarcoma viral oncogene homolog 2.5 3.1
stk16-j1 Serine/threonine kinase 16 1.4 1.5
cry-dash Cryptochrome DASH 1.3 2.3
her8a Hairy-related 8a −2.5 −2.1
setd7 SET domain containing (lysine methyltransferase) 7 −2.7 −2.5
sirt3 Sirtuin (silent mating type information regulation 2 homolog) 3 −2.7 −2.7
stc1l Stanniocalcin 1, like −2.8 −2.1
nr5a5 Nuclear receptor subfamily 5, group A, member 5 −5.7 −9.4