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Table 2 Transcriptome assembly metrics

From: BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower

 

Isogroups

Category

Large contigs (>499 nt)

Isotigs

Number

38,768

53,541

35,139

Average read number

N/A

66.92

N/A

Average contig number

1.6

1.9

N/A

Maximum contig number

50

15

N/A

Average size [nt]

N/A

1,077

997

L50 size [nt]

N/A

1,296

1,079

Largest size [nt]

N/A

14,431

9,147

  1. A sunflower transcriptome reference assembly (BRBS) was developed by combining reads from the resistant bulk (BR) and the susceptible bulk (BS).
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BMC Genomics

ISSN: 1471-2164

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