Table 2 Classification of allele-specific expression (ASE) SNPs responding to Marek’s disease virus (MDV) infection in broilers and layers
SNP type | Broiler | Layer | ||
|---|---|---|---|---|
SNPs | Genes | SNPs | Genes | |
Downstream | 1,073 | 875 | 583 | 524 |
Exonic | 1,780 | 1,501 | 1,123 | 947 |
Exonic Splicing | 39 | 38 | 41 | 41 |
Intergenic | 1,610 | 1,059 | 1,150 | 868 |
Intronic | 541 | 394 | 913 | 691 |
ncRNA_exonic | 1 | 1 | 3 | 3 |
Splicing | 8 | 8 | 7 | 7 |
Upstream | 94 | 88 | 118 | 109 |
Upstream:Downstream | 47 | 41 | 41 | 36 |
UTR’3 | 863 | 694 | 467 | 414 |
UTR’5 | 74 | 67 | 81 | 77 |
UTR’3: UTR’5 | 2 | 2 | 1 | 1 |
Total | 6,132 | 4,768 | 4,528 | 3718 |