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Table 2 Classification of allele-specific expression (ASE) SNPs responding to Marek’s disease virus (MDV) infection in broilers and layers

From: Comparison and contrast of genes and biological pathways responding to Marek’s disease virus infection using allele-specific expression and differential expression in broiler and layer chickens

SNP type Broiler Layer
  SNPs Genes SNPs Genes
Downstream 1,073 875 583 524
Exonic 1,780 1,501 1,123 947
Exonic Splicing 39 38 41 41
Intergenic 1,610 1,059 1,150 868
Intronic 541 394 913 691
ncRNA_exonic 1 1 3 3
Splicing 8 8 7 7
Upstream 94 88 118 109
Upstream:Downstream 47 41 41 36
UTR’3 863 694 467 414
UTR’5 74 67 81 77
UTR’3: UTR’5 2 2 1 1
Total 6,132 4,768 4,528 3718