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Table 4 Functional classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus infection from broilers and layers in known genes

From: Comparison and contrast of genes and biological pathways responding to Marek’s disease virus infection using allele-specific expression and differential expression in broiler and layer chickens

SNP type Broiler Layer Common
  SNPs % of SNPs Gene SNPs % of SNPs Gene Gene
Nonsynonymous 442 24.3 399 317 27.3 291 14
Stop gain 4 0.2 4 5 0.4 5 0
Stop loss 2 0.1 2 1 0.1 1 0
Synonymous 1,370 75.4 936 840 72.2 735 162
Total 1,818 100 1,341 1,163 100 1,032 176