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Table 3 Simple sequence repeats (SSRs) identified in transcriptome of horse gram

From: Comprehensive transcriptomic study on horse gram (Macrotyloma uniflorum): De novo assembly, functional characterization and comparative analysis in relation to drought stress

SSR mining

 

 Total number of sequences examined:

29, 603

 Total size of examined sequences (bp):

36, 151, 506

 Total number of identified SSRs:

6, 195

 Number of SSR containing sequences:

4, 810 (16.25%)

 Number of sequences containing more than one SSR

1, 024

 Number of SSRs present in compound formation:

514

Distribution of SSRs in different repeat types

 

 Unit size

Number of SSRs

 Mononucleotide (1)

2, 089 (43.43%)

 Dinucleotide (2)

1, 763 (36.65%)

 Trinucleotide (3)

2, 113 (43.93%)

 Tetranucleotide (4)

116 (2.41%)

 Pentanucleotide (5)

46 (0.96%)

 Hexanucleotide (6)

68 (1.41%)

  1. Details of various SSRs found in horse gram along with their type and occurrence.