Figure 3
From: HANDS: a tool for genome-wide discovery of subgenome- specific base-identity in polyploids
Percentages of shared bases between T. aestivum subgenomes and corresponding diploid progenitor-relatives. (A) Percentages of shared bases between T. aestivum subgenomes and corresponding diploid progenitor-relatives at HSP positions calculated using the base-identities assigned through NT lines and predicted by HANDS on chromosomes 1 and 5. (B) Percentages of shared bases calculated using the base-identities predicted by HANDS for the complete in silico reference genome. In all cases, the percentages were calculated by considering HSP positions where base-identity was assigned to all three subgenomes (25,259 on chromosome 1; 30,433 on chromosome 5; and 249,975 on complete in silico reference).